Metagenome-assembled genome: SRR14474044_bin.16_me... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Oceanisphaera avium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanisphaera

Attributes

collection date	2019-12-01
broad-scale environmental context	Pig digestive system
local-scale environmental context	Colon
environmental medium	Feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	pig gut metagenome
project name	Analyze the bacteria and antibiotic resistance gene in pig fecal in China
sample name	SRR14474044_bin.16_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-11
ENA-LAST-UPDATE	2022-07-11
External Id	SAMEA110321965
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-11T16:41:52Z
INSDC last update	2022-07-11T16:41:52Z
INSDC status	public
Submitter Id	SRR14474044_bin.16_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	90.99
completeness software	CheckM
contamination score	0.54
geographic location (latitude)	26.69
geographic location (longitude)	106.59
metagenomic source	pig gut metagenome
sample derived from	SAMN19078912
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474044 of study SRP319028.