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Pathogen: clinical or host-associated sample from Leptospira interrogans serovar Bataviae

Identifiers
BioSample: SAMN05467253; Sample name: R123
Organism
Leptospira interrogans serovar Bataviae
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Leptospirales; Leptospiraceae; Leptospira; Leptospira interrogans
Package
Pathogen: clinical or host-associated; version 1.0
Attributes
strainR123
collected byThong, K.L., Benacer, Z.
collection date2011-12-01
geographic locationMalaysia
hostRattus rattus
host diseaseUnknown
isolation sourcekidney
latitude and longitude3.139 N 101.68689999 E
serovarBataviae
Description

Leptospirosis is a globally important zoonotic disease caused by spirochetes of the genus Leptospira, which includes pathogenic and saprophytic strains. These bacteria colonize the kidneys of reservoir animals and are excreted via urine into the environment. Transmission to humans occurs either directly from exposure to contaminated urine or infected tissues, or indirectly via contact with contaminated soil or water. In Malaysia, Leptospirosis is an important emerging disease. However, there is a lack of information about this bacterium in terms of disease transmission, pathogenicity and the genomic features of it. Therefore the overall objective is to determine the basic genomic structures of selected Leptospira spp isolated from human and animal hosts and to infer their biology via the Next General Sequencing Technology and appropriate bioinformatics analysis. Our previous studies showed that Leptospira spp are prevalent in the environment and rats and they are genetically distinct by PFGE. By performing comparative genomics of these strains from distinct sources, we hope to better understand their genomics, virulence potential and pathogenicity. Currently, rapid and accurate diagnosis is lacking and we hope that through the omics approach, we can elucidate the important factors for the development of accurate diagnostics. The data generated will help to reveal the mechanism of changes in bacterial lifestyles and to understand how this organism can survive and compete as part of adaptation to its preferred hosts.

BioProject
PRJNA335921 Leptospira interrogans
Retrieve all samples from this project

Submission
University of Malaya, Kwai Lin Thong; 2016-08-01
Accession:
SAMN05467253
ID:
5467253

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