broad-scale environmental context | Pig digestive system |
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collection date | 2019-05-01 |
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environmental medium | Feces |
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geographic location | China |
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investigation type | metagenome-assembled genome |
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isolation source | pig gut metagenome |
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project name | In the current study, we compared the microbial community, functions and metabolites between healthy weaned piglets (group H, n = 7) and piglets with post-weaning diarrhea (group D, n = 7), in order to find out diarrhea associated microbial markers. |
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sample name | SRR17382106_bin.33_metaWRAP_v1.3_MAG |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2022-07-22 |
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ENA-LAST-UPDATE | 2022-07-22 |
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External Id | SAMEA110403279 |
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INSDC center alias | EMG |
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INSDC center name | EMG |
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INSDC first public | 2022-07-22T00:26:15Z |
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INSDC last update | 2022-07-22T00:26:15Z |
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INSDC status | public |
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Submitter Id | SRR17382106_bin.33_metaWRAP_v1.3_MAG |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | metaSPAdes v3.15.3 |
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binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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binning software | metaWRAP v1.3 |
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broker name | EMG broker account, EMBL-EBI |
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completeness score | 86.11 |
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completeness software | CheckM |
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contamination score | 0.0 |
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geographic location (latitude) | not provided |
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geographic location (longitude) | not provided |
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local environmental context | Intestine |
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metagenomic source | pig gut metagenome |
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sample derived from | SAMN24505206 |
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sequencing method | Illumina MiSeq |
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taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__ |
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taxonomic identity marker | multi-marker approach |
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