| broad-scale environmental context | Human reproductive system |
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| collection date | 2017-01-01 |
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| environmental medium | Vagina |
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| geographic location | China |
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| investigation type | metagenome-assembled genome |
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| isolation source | vaginal metagenome |
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| project name | to provide a comprehensive investigation describing the relationship between high-risk HPV16 infection and vaginal microbiome. |
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| sample name | SRR11749281_bin.4_metaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-10-19 |
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| ENA-LAST-UPDATE | 2022-10-19 |
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| External Id | SAMEA111491508 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-10-19T12:28:19Z |
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| INSDC last update | 2022-10-19T12:28:19Z |
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| INSDC status | public |
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| Submitter Id | SRR11749281_bin.4_metaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 66.11 |
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| completeness software | CheckM |
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| contamination score | 0.53 |
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| geographic location (latitude) | 30.26 |
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| geographic location (longitude) | 120.41 |
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| local environmental context | Vagina |
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| metagenomic source | vaginal metagenome |
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| sample derived from | SAMN14859619 |
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| sequencing method | HiSeq X Ten |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptococcaceae;g__Peptococcus;s__Peptococcus niger |
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| taxonomic identity marker | multi-marker approach |
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