FCS_M sample - metagenomic bin Desulfobacterota_02 - BioSample

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Result Filters

Organism: uncultured Desulfobacterales bacterium
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; environmental samples

Attributes

broad-scale environmental context	ENVO:00000303
collection date	2018-09-04
environmental medium	ENVO:00002007
geographic location	France
investigation type	metagenome-assembled genome
isolation source	coastal sediment
project name	PRJEB54670
sample name	FCS_M_Desulfobacterota_02
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2022-07-19
ENA-LAST-UPDATE	2022-07-19
External Id	SAMEA110353757
INSDC center alias	UNIVERSITY OF VIENNA
INSDC center name	UNIVERSITY OF VIENNA
INSDC first public	2022-07-19T12:18:30Z
INSDC last update	2022-07-19T12:18:30Z
INSDC status	public
Submitter Id	FCS_M_Desulfobacterota_02
assembly software	IDBA and Metaspades
binning parameters	4-mer frequencies
binning software	MetaBAT v. 2.12.1, MaxBin v. 2.2.4, Metawatt v. 3.5.3 summarized via DASTool v. 1.1.0 and refined in Anvi’O v. 5.2
completeness score	81.09
completeness software	CheckM v.1.0.7
contamination score	4.3
geographic location (latitude)	49.33866094
geographic location (longitude)	-0.46944532
local environmental context	ENVO:00002199
metagenomic source	sediment metagenome
sample derived from	ERS12450918
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	Genome Taxonomy Database classifier (120 protein markers)

Description: This sample represents a metagenomic bin from the metagenomic sample FCS_M (ERS12450918), magnetic particles from sediment in Courseulles-sur-Mer beach in Normandy (France)