| broad-scale environmental context | mouse digestive system |
|---|
| collection date | 2021-01-20 |
|---|
| environmental medium | feces |
|---|
| geographic location | China |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | mouse gut metagenome |
|---|
| project name | Five male C57BM/6 mice were given healthy feeding and alcohol feeding respectively. The healthy feeding mice were the control group, and the alcohol feeding mice were the experimental group. The experimental group mice were given double bottles of alcohol and ultra-pure water, and the alcohol concentration gradient was 9%, 12% and 15%, and the concentration was successively fed from low to high, and each concentration was fed for 7 days. |
|---|
| sample name | SRR15322606_bin.1_metawrap_v1.3_MAG |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| ENA-FIRST-PUBLIC | 2022-11-18 |
|---|
| ENA-LAST-UPDATE | 2022-11-18 |
|---|
| External Id | SAMEA112145387 |
|---|
| INSDC center alias | EMG |
|---|
| INSDC center name | EMG |
|---|
| INSDC first public | 2022-11-18T12:20:49Z |
|---|
| INSDC last update | 2022-11-18T12:20:49Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | SRR15322606_bin.1_metawrap_v1.3_MAG |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | not provided |
|---|
| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
|---|
| binning software | metawrap v1.3 |
|---|
| broker name | EMG broker account, EMBL-EBI |
|---|
| completeness score | 71.55 |
|---|
| completeness software | CheckM |
|---|
| contamination score | 0.0 |
|---|
| geographic location (latitude) | 30.4 |
|---|
| geographic location (longitude) | 120.6 |
|---|
| local environmental context | digestive tube |
|---|
| metagenomic source | mouse gut metagenome |
|---|
| sample derived from | SAMN20499440 |
|---|
| sequencing method | Illumina NovaSeq 6000 |
|---|
| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__ |
|---|
| taxonomic identity marker | multi-marker approach |
|---|