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RH-26jul17-288

Identifiers
BioSample: SAMEA112175642; SRA: ERS14285483
Organism
Bacteroidota bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; unclassified Bacteroidota
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2017-07-26
environmental mediumfreshwater lake biome
geographic locationCzech Republic
isolation sourcelake water
project namePRJEB35770
sample nameRH-26jul17-288
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112175642
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-11-30T12:18:10Z
INSDC last update2022-11-30T12:18:10Z
INSDC statuspublic
Submitter IdRH-26jul17-288
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score95.57
completeness softwarecheckm
contamination score0.49
geographic location (latitude)48.846361
geographic location (longitude)14.487639
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS4146246
taxonomic identity markermulti-marker approach
Description

RH-26jul17-288

BioProject
PRJEB35770 Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes)
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112175642
ID:
31963248

BioProject Nucleotide

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