MIGS Cultured Bacterial/Archaeal sample from Lacto... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Lactobacillus gasseri 202-4

Identifiers: BioSample: SAMN00002206; Sample name: HMP098-454 Sample; SRA: SRS002407

Organism: Lactobacillus gasseri 202-4
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus gasseri

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

environmental medium	biological product [ENVO:02000043]
host	Homo sapiens
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
environmental package	missing
isolation source	missing
project name	Lactobacillus gasseri 202-4
source material identifiers	BEI HM-801
investigation type	missing
reference for biomaterial	not determined
collection date	not determined
geographic location	not determined
latitude and longitude	not determined
isolation and growth condition	not determined
estimated size	1820000
strain	202-4
number of replicons	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
sequencing method	454
nucleic acid extraction	not determined
misc_param: HMP supersite	urogenital_tract
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
project_type	Reference Genome
finishing strategy (depth of coverage)	Level 2: High-Quality Draft128x;;70
assembly	not determined
misc_param: HMP body site	Vaginal

Description

Lactobacillus gasseri appears to be the main species of lactobacilli that inhabits the human gastrointestinal tract. It is a rod-shaped, gram-positive anaerobe. Of the lactobacilli, it is the most amenable to DNA introduction and manipulation which should prove useful in the functional genomic analysis of this species. It has been shown to be an effective probiotic in suppressing Helicobacter pylori infections in humans. This strain was isolated from the human vaginal cavity.

Keywords: GSC:MIxS;MIGS:6.0