collection date | 2014-11-04 |
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broad-scale environmental context | Host-associated |
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local-scale environmental context | Human |
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environmental medium | Digestive system |
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geographic location | Spain |
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investigation type | metagenome-assembled genome |
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isolation source | human gut metagenome |
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project name | In this study, we performed a randomized, placebo-controlled, double-blind study in newly diagnosed T2D patients on a calorie-restricted diet and showed that metformin, but not calorie restriction, had rapid effects on the composition and function of the gut microbiota. |
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sample name | SRR5579983_bin.125_CONCOCT_v1.1_MAG |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2023-01-03 |
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ENA-LAST-UPDATE | 2023-01-03 |
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External Id | SAMEA14085877 |
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INSDC center alias | EBI |
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INSDC center name | European Bioinformatics Institute |
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INSDC first public | 2023-01-03T00:33:34Z |
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INSDC last update | 2023-01-03T00:33:34Z |
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INSDC status | public |
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Submitter Id | SRR5579983_bin.125_CONCOCT_v1.1_MAG |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | metaspades_v3.13.0 |
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binning parameters | Default |
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binning software | CONCOCT v1.1 |
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broker name | EMG broker account, EMBL-EBI |
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completeness score | 98.44 |
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completeness software | CheckM |
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contamination score | 0.39 |
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geographic location (latitude) | 41.99774 |
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geographic location (longitude) | 2.820006 |
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metagenomic source | human gut metagenome |
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sample derived from | SAMN06233224 |
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scientific_name | uncultured Bacteroides sp. |
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sequencing method | NextSeq 500 |
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taxonomic identity marker | multi-marker approach |
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