| collection date | 2018-10-15 |
|---|
| broad-scale environmental context | marine biome [ENVO:00000447] |
|---|
| local-scale environmental context | microbial feature [ENVO:00002150] |
|---|
| environmental medium | Macroalgae |
|---|
| geographic location | China |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | Mariane macroalgea Gelidium sp. |
|---|
| project name | Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments |
|---|
| sample name | H1_Bin_METABAT__105_1 |
|---|
| ENA-CHECKLIST | ERC000011 |
|---|
| ENA-FIRST-PUBLIC | 2023-01-18 |
|---|
| ENA-LAST-UPDATE | 2023-01-18 |
|---|
| External Id | SAMEA14073023 |
|---|
| INSDC center alias | Marine College, Shandong University |
|---|
| INSDC center name | marine college, shandong university |
|---|
| INSDC first public | 2023-01-18T00:18:45Z |
|---|
| INSDC last update | 2023-01-18T00:18:45Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | H1_Bin_METABAT__105_1 |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | MEGAHIT v1.2.9 |
|---|
| binning parameters | anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond |
|---|
| binning software | CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2 |
|---|
| completeness score | 92.12 |
|---|
| completeness software | checkM v1.1.3 |
|---|
| contamination score | 0 |
|---|
| geographic location (latitude) | 37.562 |
|---|
| geographic location (longitude) | 122.121 |
|---|
| metagenomic source | marine metagenome |
|---|
| sample derived from | ERS10980522 |
|---|
| sequencing method | Illumina Nova-PE150 |
|---|
| taxonomic identity marker | multi-marker approach (GTDB-tk v1.03, GTDB v95) |
|---|