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Metagenome-assembled genome: extra-SRR5574509.8_1677796667

Identifiers
BioSample: SAMEA112725310; SRA: ERS14722780
Organism
Porphyromonadaceae bacterium UBA7088
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae
Attributes
broad-scale environmental contextmouse digestive system
collection date2016-01-25
environmental mediumfeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project namemouse gut metagenome Raw sequence reads
sample nameextra-SRR5574509.8_1677796667
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-06
ENA-LAST-UPDATE2023-03-06
External IdSAMEA112725310
INSDC center aliasHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center nameHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public2023-03-06T04:22:15Z
INSDC last update2023-03-06T04:22:15Z
INSDC statuspublic
Submitter Idextra-SRR5574509.8_1677796667
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes
binning parametersdefault
binning softwaremetabat2
completeness score51.97
completeness softwareCheckM
contamination score2.07
geographic location (latitude)32.12
geographic location (longitude)118.78
local environmental contextmouse gut
metagenomic sourcemouse gut metagenome
sample derived fromSAMN07138966
scientific_namePorphyromonadaceae bacterium UBA7088
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR5574509 of study SRP107170.

BioProject
PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project

Submission
EBI; 2023-03-08
Accession:
SAMEA112725310
ID:
33669502

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