Lactobacillus timonensis MAG, UW_DM_LIMLAC3_4 - BioSample - NCBI

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Lactobacillus timonensis MAG, UW_DM_LIMLAC3_4

Identifiers: BioSample: SAMN22412694; Sample name: UW_DM_LIMLAC3_4

Organism: [Lactobacillus] timonensis
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus

Package: MIMAG: metagenome-assembled genome; version 6.0

Attributes

collection date	2020-01-25
geographic location	USA: Madison, WI
latitude and longitude	43.073051 N 89.401230 W
isolation source	anaerobic bioreactor effluent; solid retention time of 6 days
isolate	UW_DM_LIMLAC3_4
broad-scale environmental context	bioreactor [ENVO:00002123]
local-scale environmental context	anaerobic bioreactor [ENVO:00002124]
environmental medium	biological waste material [ENVO:01000373]
dissolved oxygen	0 micromole per kilogram
pH	5.5
reference for biomaterial	3300045590_23
relationship to oxygen	anaerobe
sample collection device or method	Syringe
sample material processing	Biomass centrifuged 10 min 10,000xrcf, aliquot frozen for DNA extraction
sample size	2 milliliter
sample storage location	Freezer
sample storage temperature	-80 degree Celcius
source material identifiers	DMB5_5SRT_B
temperature	35 degree Celcius
sample type	metagenomic assembly
metagenome source	bioreactor sludge metagenome
derived from	SAMN22064447
experimental factor	solid retention time of 6 days
metagenomic	1
environmental-sample	1

Description

Improved metagenome assembled genome from a carbohydrate-rich, dairy manure hydrolysate fermenting bioreactor

Keywords: GSC:MIxS;MIMAG:6.0

BioProject: PRJNA768591 bioreactor sludge metagenome
Retrieve all samples from this project

Submission: University of Wisconsin-Madison, Kevin Myers; 2021-10-19

Accession:: SAMN22412694
ID:: 22412694

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BioSample links for Nucleotide (Select 2468462268) (1)
BioSample
Lactobacillus timonensis MAG, UW_DM_LIMLAC3_4
Lactobacillus timonensis MAG, UW_DM_LIMLAC3_4

biosample
Protein Links for Nucleotide (Select 2468462071) (22)
Protein
Protein Links for Nucleotide (Select 2468462286) (14)
Protein
MAG: [Lactobacillus] timonensis isolate UW_DM_LIMLAC3_4 Ga0455771_01969, whole g...
MAG: [Lactobacillus] timonensis isolate UW_DM_LIMLAC3_4 Ga0455771_01969, whole genome shotgun sequence
gi|2468462325|ref|NZ_JALCQX01000003 gnl|WGS:NZ_JALCQX01|Ga0455771_01969

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