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Metagenome-assembled genome: 3-1_110307.37_1677751178

Identifiers
BioSample: SAMEA112711810; SRA: ERS14709376
Organism
Porphyromonadaceae bacterium UBA7088
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae
Attributes
broad-scale environmental contextmouse digestive system
collection date2012-01-01
environmental mediumfeces
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameA Catalogue of the Mouse Gut Metagenome
sample name3-1_110307.37_1677751178
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-06
ENA-LAST-UPDATE2023-03-06
External IdSAMEA112711810
INSDC center aliasHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center nameHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public2023-03-06T00:25:05Z
INSDC last update2023-03-06T00:25:05Z
INSDC statuspublic
Submitter Id3-1_110307.37_1677751178
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes
binning parametersdefault
binning softwaremetabat2
completeness score74.25
completeness softwareCheckM
contamination score0.38
geographic location (latitude)40.70606
geographic location (longitude)-73.99703
local environmental contextmouse gut
metagenomic sourcemouse gut metagenome
sample derived fromSAMEA3134407
scientific_namePorphyromonadaceae bacterium UBA7088
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR675359 of study ERP008710.

BioProject
PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project

Submission
EBI; 2023-03-08
Accession:
SAMEA112711810
ID:
33659529

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