Metagenome-assembled genome: 3-1_110307.37_1677751... - BioSample

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Result Filters

Organism: Porphyromonadaceae bacterium UBA7088
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae

Attributes

broad-scale environmental context	mouse digestive system
collection date	2012-01-01
environmental medium	feces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	A Catalogue of the Mouse Gut Metagenome
sample name	3-1_110307.37_1677751178
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112711810
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T00:25:05Z
INSDC last update	2023-03-06T00:25:05Z
INSDC status	public
Submitter Id	3-1_110307.37_1677751178
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	74.25
completeness software	CheckM
contamination score	0.38
geographic location (latitude)	40.70606
geographic location (longitude)	-73.99703
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMEA3134407
scientific_name	Porphyromonadaceae bacterium UBA7088
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR675359 of study ERP008710.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
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