broad-scale environmental context | Human reproductive system |
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collection date | 2008-01-01 |
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environmental medium | Vagina |
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geographic location | USA |
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investigation type | metagenome-assembled genome |
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isolation source | vaginal metagenome |
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project name | The overarching goal of the VMRC is to identify correlates of stability and resilience in the vaginal microbiota and leverage these features to devise a framework for an intervention to maintain/restore vaginal health. |
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sample name | SRR17635715_bin.5_metaWRAP_v1.3_MAG |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2022-11-02 |
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ENA-LAST-UPDATE | 2022-11-02 |
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External Id | SAMEA111539275 |
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INSDC center alias | EMG |
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INSDC center name | EMG |
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INSDC first public | 2022-11-02T04:23:13Z |
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INSDC last update | 2022-11-02T04:23:13Z |
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INSDC status | public |
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Submitter Id | SRR17635715_bin.5_metaWRAP_v1.3_MAG |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | metaSPAdes v3.15.3 |
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binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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binning software | metaWRAP v1.3 |
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broker name | EMG broker account, EMBL-EBI |
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completeness score | 92.68 |
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completeness software | CheckM |
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contamination score | 0.27 |
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geographic location (latitude) | 39.2904 |
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geographic location (longitude) | -76.6122 |
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local environmental context | Vagina |
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metagenomic source | vaginal metagenome |
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sample derived from | SAMN25037619 |
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sequencing method | Illumina HiSeq 4000 |
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taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Micrococcales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium lacticum |
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taxonomic identity marker | multi-marker approach |
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