U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

Metagenome-assembled genome: SRR16916891_bin.3_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA111388743; SRA: ERS13485721
Organism
Hoylesella timonensis
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Hoylesella
Attributes
broad-scale environmental contextHuman reproductive system
collection date2004-01-01
environmental mediumVagina
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcevaginal metagenome
project name16SrRNA gene V3V4 region amplicon and shotgun metagenomic sequence data for reproductive-age mother daughter pairs.
sample nameSRR16916891_bin.3_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-09-23
ENA-LAST-UPDATE2022-09-23
External IdSAMEA111388743
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-09-23T16:28:01Z
INSDC last update2022-09-23T16:28:01Z
INSDC statuspublic
Submitter IdSRR16916891_bin.3_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score99.29
completeness softwareCheckM
contamination score0.0
geographic location (latitude)39.2904
geographic location (longitude)-76.6122
local environmental contextVagina
metagenomic sourcevaginal metagenome
sample derived fromSAMN23036044
sequencing methodIllumina HiSeq 4000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella timonensis
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR16916891 of study SRP345453.

BioProject
PRJEB53599
Retrieve all samples from this project

Submission
EBI; 2022-09-24
Accession:
SAMEA111388743
ID:
31003279

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center