collection date | 2018-04-23 |
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broad-scale environmental context | freshwater lake |
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local-scale environmental context | lake |
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environmental medium | fresh water |
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geographic location | Czech Republic |
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investigation type | metagenome-assembled genome |
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isolation source | Freshwater lake |
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project name | PRJEB52406 |
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sample name | HRSG-H9-bin-96 |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2023-04-13 |
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ENA-LAST-UPDATE | 2023-04-13 |
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External Id | SAMEA110029917 |
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INSDC center alias | BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO |
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INSDC center name | BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO |
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INSDC first public | 2023-04-13T16:27:05Z |
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INSDC last update | 2023-04-13T16:27:05Z |
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INSDC status | public |
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Submitter Id | HRSG-H9-bin-96 |
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assembly quality | Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs |
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assembly software | MEGAHIT; kmer set 49,69,89,109,129,149 |
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binning parameters | coverage and kmer |
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binning software | MetaBAT2 |
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completeness score | 73.46 |
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completeness software | checkm |
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contamination score | 0.18 |
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geographic location (latitude) | 48.846361 |
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geographic location (longitude) | 14.487639 |
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metagenomic source | freshwater metagenome |
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sample derived from | ERS11712907 |
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scientific_name | Gemmatimonas phototrophica |
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sequencing method | Illumina NovaSeq 6000 |
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taxonomic identity marker | multi-marker approach |
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