broad-scale environmental context | aquatic biome |
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collected by | Manuel Maldonado |
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collection date | 2021-02-01 |
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depth | 14 |
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environmental medium | adult sponge tissue |
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geographic location | Spain |
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host life stage | adult |
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host | Petrosia ficiformis |
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host taxonomy ID | 68564 (68564) |
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identified by | Manuel Maldonado |
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investigation type | metagenome-assembled genome |
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isolation source | Sponge: Petrosia ficiformis |
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tissue | WHOLE ORGANISM |
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project name | ASG |
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family role | beneficial |
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sample name | 96736c8f-e424-4c7a-a7cc-5c0d8e7e2df7 |
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specimen voucher | NOT PROVIDED |
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16S recovered | Yes |
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16S recovery software | PROKKA (version 1.14.5) |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2023-05-03T10:14:20Z |
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ENA-LAST-UPDATE | 2023-11-23T13:16:43Z |
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External Id | SAMEA113399341 |
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GAL | Geomar Helmholtz Centre |
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GAL_sample_id | NOT PROVIDED |
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INSDC center name | Tree of Life Programme |
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INSDC first public | 2023-05-03T10:14:20Z |
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INSDC last update | 2023-11-23T13:16:43Z |
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INSDC status | public |
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MAG coverage software | Minimap2 (version 2.24-r1122) |
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Submitter Id | 96736c8f-e424-4c7a-a7cc-5c0d8e7e2df7 |
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assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
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assembly software | Hifiasm (version 0.16.1-r375) |
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binning parameters | coverage; graph; hic-mapping |
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binning software | DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR |
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collecting institution | CEAB-CSIC |
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completeness score | 97.19 |
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completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
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contamination score | 4.6 |
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geographic location (latitude) | 41.67333 |
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geographic location (longitude) | 2.80314 |
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geographic location (region and locality) | Girona|Blanes |
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habitat | rocky bottom |
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identifier_affiliation | CEAB-CSIC |
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local environmental context | marine benthic biome |
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metagenomic source | sponge metagenome |
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number of standard tRNAs extracted | 47 |
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sample derived from | SAMEA113399216 |
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scientific_name | uncultured Latescibacteria bacterium |
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sequencing method | Pacbio Sequel II |
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specimen id | GHC0000184 |
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tRNA extraction software | PROKKA (version 1.14.5) |
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taxonomic classification | GTDB-TK (version 2.1.1); GTDB (release 207_v2) |
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taxonomic identity marker | taxonomic classification defined by topology and ANI |
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tolid | odPetFici3.Latescibacteria_2 |
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