MGBC100337

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Result Filters

Organism: uncultured Bacteroides sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	Japan
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC100337
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03
ENA-LAST-UPDATE	2023-02-03
External Id	SAMEA112374328
INSDC center alias	UNIVERSITY OF CAMBRIDGE
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:36:13Z
INSDC last update	2023-02-03T00:36:13Z
INSDC status	public
Submitter Id	MGBC100337
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	96.30
completeness software	CheckM
contamination score	0.00
geographic location (latitude)	35.02104
geographic location (longitude)	135.75385
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	DRR014786
scientific_name	uncultured Bacteroides sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC100337
MGBC100337

biosample
BioSample links for Nucleotide (Select 2529609492) (1)
BioSample
MAG: uncultured Bacteroides sp. isolate MGBC100337 MGBC100337.122, whole genome ...
MAG: uncultured Bacteroides sp. isolate MGBC100337 MGBC100337.122, whole genome shotgun sequence
gi|2529609507|ref|NZ_CAPKTD01000012 gnl|WGS:NZ_CAPKTD01|MGBC100337.122

Nucleotide
PREDICTED: Homo sapiens solute carrier family 16 member 9 (SLC16A9), transcript ...
PREDICTED: Homo sapiens solute carrier family 16 member 9 (SLC16A9), transcript variant X10, mRNA
gi|2462517581|ref|XM_054365080.1|

Nucleotide