Microbe sample from Pseudoalteromonas sp. - BioSample - NCBI

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Microbe sample from Pseudoalteromonas sp.

Identifiers: BioSample: SAMN09638514; Sample name: Uncultivated Pseudoalteromonas sp. HyVt-327 genome recovered from SRR1555743 and SRR1555748; SRA: SRS3740093

Organism: Pseudoalteromonas sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas; unclassified Pseudoalteromonas

Package: Microbe; version 1.0

Attributes

isolate	HyVt-327
isolation source	Loki non-amplified sample from Loki's castle hydrothermal vent sediment
collection date	2010
geographic location	Arctic Ocean: Gakkel Ridge
sample type	metagenomic assembly
latitude and longitude	73.763167 N 8.464000 E
subsource note	Metagenome-assembled genome binned from sequencing reads available in SRR1555743 and SRR1555748
metagenome source	marine sediment metagenome
assembly_method_and_version	MEGAHIT v1.1.2
completeness_estimated	98.4
contamination_estimated	1.23
quality_assessment_method_and_version	CheckM v1.0.7
environmental-sample	true
genome_coverage	4.03
mapping_method_and_version	Bowtie 2 v2.2.8
metagenomic	true

BioProject: PRJNA480137 metagenomes
Retrieve all samples from this project

Submission: The University of Hong Kong, Zhichao Zhou; 2018-07-11

Accession:: SAMN09638514
ID:: 9638514

BioProject SRA Nucleotide

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BioSample links for Nucleotide (Select 2537609096) (1)
BioSample
Microbe sample from Pseudoalteromonas sp.
Microbe sample from Pseudoalteromonas sp.

biosample
PREDICTED: Homo sapiens Rho guanine nucleotide exchange factor 11 (ARHGEF11), tr...
PREDICTED: Homo sapiens Rho guanine nucleotide exchange factor 11 (ARHGEF11), transcript variant X22, mRNA
gi|2217272607|ref|XM_011510189.4|

Nucleotide
TM0106 family RecB-like putative nuclease [Sphingobium yanoikuyae]
TM0106 family RecB-like putative nuclease [Sphingobium yanoikuyae]
gi|2664682745|ref|WP_328805881.1|

Protein
Pseudoalteromonas sp. strain KS27803 16S ribosomal RNA gene, partial sequence
Pseudoalteromonas sp. strain KS27803 16S ribosomal RNA gene, partial sequence
gi|2745693263|gb|PP937158.1|

Nucleotide

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