| broad-scale environmental context | Chicken digestive system |
|---|
| collection date | 2019-10-14 |
|---|
| environmental medium | Cecum |
|---|
| geographic location | Spain |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | chicken gut metagenome |
|---|
| project name | HoloFood Chicken -- Prior Chicken |
|---|
| sample name | ERR4968712_bin.40_MetaWRAP_v1.1_MAG |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| ENA-FIRST-PUBLIC | 2023-03-22 |
|---|
| ENA-LAST-UPDATE | 2023-03-22 |
|---|
| External Id | SAMEA110703340 |
|---|
| INSDC center alias | UNIVERSITY OF COPENHAGEN |
|---|
| INSDC center name | UNIVERSITY OF COPENHAGEN |
|---|
| INSDC first public | 2023-03-22T12:23:01Z |
|---|
| INSDC last update | 2023-03-22T12:23:01Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | ERR4968712_bin.40_MetaWRAP_v1.1_MAG |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | metaspades_v3.14 |
|---|
| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
|---|
| binning software | MetaWRAP v1.1 |
|---|
| broker name | EMG broker account, EMBL-EBI |
|---|
| completeness score | 100 |
|---|
| completeness software | CheckM |
|---|
| contamination score | 0.0 |
|---|
| geographic location (latitude) | 41.170048 |
|---|
| geographic location (longitude) | 1.168491 |
|---|
| local environmental context | Digestive tube |
|---|
| metagenomic source | chicken gut metagenome |
|---|
| sample derived from | SAMEA7697613 |
|---|
| scientific_name | uncultured Cloacibacillus sp. |
|---|
| sequencing method | DNBSEQ-G400 |
|---|
| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Synergistetes;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Cloacibacillus;s__ |
|---|
| taxonomic identity marker | multi-marker approach |
|---|