| broad-scale environmental context | Aquatic |
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| collection date | 2011-04-27 |
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| environmental medium | Deep Atlantic Ocean |
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| geographic location | Pacific Ocean |
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| investigation type | metagenome-assembled genome |
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| isolation source | marine metagenome |
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| project name | Marine microbial communities from the Deep Pacific Ocean - MP1648 metagenome |
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| sample name | SRR3962772_bin.3_MetaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-04-24 |
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| ENA-LAST-UPDATE | 2023-04-24 |
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| External Id | SAMEA112958511 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2023-04-24T20:16:01Z |
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| INSDC last update | 2023-04-24T20:16:01Z |
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| INSDC status | public |
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| Submitter Id | SRR3962772_bin.3_MetaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 99.47 |
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| completeness software | CheckM |
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| contamination score | 1.02 |
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| geographic location (latitude) | -5.74 |
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| geographic location (longitude) | -170.77 |
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| local environmental context | Marine |
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| metagenomic source | marine metagenome |
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| sample derived from | SAMN05421555 |
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| scientific_name | uncultured Rhodococcus sp. |
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| sequencing method | Illumina HiSeq 2000 |
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| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Corynebacteriales;f__Nocardiaceae;g__Rhodococcus;s__ |
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| taxonomic identity marker | multi-marker approach |
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