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78526416-339a-45b8-a6d3-8fabb82c2801-asg-MetaTOR_44_9

Identifiers
BioSample: SAMEA112878461; SRA: ERS14885116
Organism
uncultured Bryobacterales bacterium
cellular organisms; Bacteria; Acidobacteriota; Terriglobia; Bryobacterales; environmental samples
Attributes
broad-scale environmental contextaquatic biome
collected byManuel Maldonado
collection date2021-02-01
depth14
environmental mediumadult sponge tissue
geographic locationSpain
hostAgelas oroides
host taxonomy ID72715 (72715)
identified byManuel Maldonado
investigation typemetagenome-assembled genome
isolation sourceSponge: Agelas oroides
life stageadult
tissueWHOLE ORGANISM
project nameASG
family rolebeneficial
sample name78526416-339a-45b8-a6d3-8fabb82c2801
sexNOT_SPECIFIED
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-05T16:11:24Z
ENA-LAST-UPDATE2023-11-20T15:50:39Z
External IdSAMEA112878461
GALGeomar Helmholtz Centre
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
INSDC first public2023-04-05T16:11:24Z
INSDC last update2023-11-20T15:50:39Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id78526416-339a-45b8-a6d3-8fabb82c2801
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwareHifiasm-Meta (version 0.3-r061); Hifiasm (version 0.13-r308)
binning parameterscoverage; graph; hic-mapping
binning softwareMetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR; DASTOOL (version 1.1.5)
collecting institutionCEAB-CSIC
completeness score96.15
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score1.71
geographic location (latitude)41.67333
geographic location (longitude)2.80314
geographic location (region and locality)Girona|Blanes
habitatrocky bottom
identifier_affiliationCEAB-CSIC
local environmental contextmarine benthic biome
metagenomic sourcesponge metagenome
number of standard tRNAs extracted50
sample derived fromSAMEA112878278
scientific_nameuncultured Bryobacterales bacterium
sequencing methodPacbio Sequel II
specimen idGHC0000190
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic novelty determined using RED
tolidodAgeOroi1.Bryobacterales_5
BioProject
PRJEB63881 odAgeOroi1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-04-07
Accession:
SAMEA112878461
ID:
34111225

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