MIGS Cultured Bacterial/Archaeal sample from Campy... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Campylobacter gracilis RM3268

Identifiers: BioSample: SAMN00000715; Sample name: HMP050-454 Sample; SRA: SRS001043

Organism: Campylobacter gracilis RM3268
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter gracilis

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

environmental medium	biological product [ENVO:02000043]
host	Homo sapiens
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
environmental package	missing
isolation source	missing
project name	Campylobacter gracilis RM3268
source material identifiers	ATCC 33236
investigation type	missing
reference for biomaterial	not determined
collection date	not determined
geographic location	not determined
latitude and longitude	not determined
isolation and growth condition	not determined
estimated size	2256000
strain	RM3268
number of replicons	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
sequencing method	454
nucleic acid extraction	not determined
misc_param: HMP supersite	oral
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
project_type	Reference Genome
finishing strategy (depth of coverage)	Level 2: High-Quality Draft21x;33
assembly	Newbler 1.1.03.24-64-7
misc_param: HMP body site	Gingival crevices

Description

Campylobacter gracilis is a gram-negative, obligately anaerobe found in the gingival crevice as well as brain abscesses, pulmonary infections, and wound infections. The bacterium is non-motile and is often associated with infections.

Keywords: GSC:MIxS;MIGS:6.0