broad-scale environmental context | human digestive system |
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collection date | not provided |
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environmental medium | saliva |
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geographic location | not provided |
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investigation type | metagenome-assembled genome |
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isolation source | oral metagenome |
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project name | salivary metagenomic in Chinese Children |
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sample name | SRR5395413_bin.24_MetaWRAP_v1.3_MAG |
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ENA-CHECKLIST | ERC000047 |
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INSDC center name | EMG |
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Submitter Id | SRR5395413_bin.24_MetaWRAP_v1.3_MAG |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | metaSPAdes v3.15.3 |
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binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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binning software | MetaWRAP v1.3 |
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broker name | EBI-EMG |
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completeness score | 86.53 |
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completeness software | CheckM |
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contamination score | 0.3 |
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geographic location (latitude) | not provided |
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geographic location (longitude) | not provided |
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local environmental context | oral cavity |
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metagenomic source | oral metagenome |
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sample derived from | SAMN06646483 |
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scientific_name | uncultured Veillonella sp. |
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sequencing method | Illumina HiSeq 2500 |
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taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__ |
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taxonomic identity marker | multi-marker approach |
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