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714386e1-bc16-422e-93f9-a3f32d7c9c6c-asg-MAGScoT_cleanbin_000026

Identifiers
BioSample: SAMEA114409426; SRA: ERS16398098
Organism
uncultured Draconibacterium sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Marinilabiliales; Prolixibacteraceae; Draconibacterium; environmental samples
Attributes
broad-scale environmental contextaquatic biome
collected byJOHANA ROTTEROVA
collection date2022-09-02
depth1899-12-30
environmental mediumciliate culture
geographic locationUSA
host life stagevegetative cell
hostTrimyema sp. strain FARO3
host taxonomy ID2980488 (2980488)
identified byANNA SCHRECENGOST
investigation typemetagenome-assembled genome
isolation sourceCiliate: Trimyema sp. strain FARO3
tissueWHOLE ORGANISM
project nameASG
sample collection device or methodhand collected into a 50 ml tube
sample name714386e1-bc16-422e-93f9-a3f32d7c9c6c
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
GALUniversity of British Columbia
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id714386e1-bc16-422e-93f9-a3f32d7c9c6c
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
barcoding centerUNIVERSITY OF RHODE ISLAND
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionUNIVERSITY OF RHODE ISLAND
completeness score100
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score4.12
culture_or_strain_idFARO3 strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
geographic location (latitude)41.49
geographic location (longitude)-71.42
geographic location (region and locality)RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitatmarine
identifier_affiliationUNIVERSITY OF RHODE ISLAND
local environmental contextmarine biome
metagenomic sourceciliate metagenome
number of standard tRNAs extracted49
original collection date2019
original collection locationPORTUGAL | QUELFES
original geographic location (latitude)37.030389
original geographic location (longitude)-7.808889
sample derived fromSAMEA114409385
scientific_nameuncultured Draconibacterium sp.
sequencing methodPacbio Sequel II
specimen_idUOBC0000034
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification defined by topology and ANI
tolidpiTriSpec1.Draconibacterium_sp_5
BioProject
PRJEB69791 piTriSpec1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-09-22
Accession:
SAMEA114409426
ID:
37511972

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