This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

broad-scale environmental context	hominid body
collection date	2015/2016
environmental medium	feces
geographic location	Gabon
investigation type	metagenome-assembled genome
isolation source	Feces of Gorilla gorilla gorilla (GAB)
sample name	H07624-L1_cleanbin_000004
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:22Z
ENA-LAST-UPDATE	2023-11-07T00:47:22Z
External Id	SAMEA114586331
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:22Z
INSDC last update	2023-11-07T00:47:22Z
INSDC status	public
Submitter Id	H07624-L1_cleanbin_000004
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	87.5
completeness software	MAGSCoT
contamination score	4.17
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Gorilla gorilla gut
sample derived from	SAMN17312179
scientific_name	Escherichia coli
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets