Metagenome-assembled genome: SRR5788345_binner13_R... - BioSample

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Result Filters

Organism: uncultured Puniceicoccaceae bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Opitutia; Puniceicoccales; Puniceicoccaceae; environmental samples

Attributes

broad-scale environmental context	water
collection date	2011-03-06
environmental medium	ocean
geographic location	Atlantic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Marine metagenomes from the bioGEOTRACES project Metagenome
sample name	SRR5788345_binner13_Refined_13
ENA first public	2024-03-12
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR5788345_binner13_Refined_13
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.15.3
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	76.63
completeness software	CheckM2_v1.0.1
contamination score	0.31
geographic location (latitude)	-48.93580000
geographic location (longitude)	-48.79330000
local environmental context	marine
metagenomic source	marine metagenome
sample derived from	SAMN07136682
scientific_name	uncultured Puniceicoccaceae bacterium
sequencing method	NextSeq 550
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5788345 of study SRP110813.