Metagenome-assembled genome: ERR594358_binner123_R... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Identifiers: BioSample: SAMEA115325429; Sample name: ERR594358_binner123_Refined_17; SRA: ERS18322615

Organism: Pseudohongiella nitratireducens
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudohongiellaceae; Pseudohongiella

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
investigation type	metagenome-assembled genome
project name	Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.14.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	Pseudohongiella nitratireducens
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA2619677
geographic location (longitude)	14.2574 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	100 %
contamination score	0.11 %
geographic location (latitude)	35.759 DD
scientific_name	Pseudohongiella nitratireducens
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2000
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594358 of study ERP003708.