Metagenome-assembled genome: ERR2762163_concoct_178

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Identifiers: BioSample: SAMEA115300901; Sample name: ERR2762163_concoct_178; SRA: ERS18298087

Organism: uncultured Cobetia sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Cobetia; environmental samples

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
investigation type	metagenome-assembled genome
project name	Analysis of the genes and genomes present in Tara Oceans Polar Circle virus size fractions through shotgun DNA sequencing. Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.14.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Cobetia sp.
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA4398001
geographic location (longitude)	-85.6552 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	99.35 %
contamination score	0.08 %
geographic location (latitude)	74.305 DD
scientific_name	uncultured Cobetia sp.
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2000
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2762163 of study ERP010882.