ERS11624151

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Afipia felis (cat scratch disease bacillus)
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Afipia

Attributes

collection date	2019-04-02
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Switzerland
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB49198
sample name	JJ-LUK12B-28-5-m1-bin316
ENA first public	2024-04-18
ENA-CHECKLIST	ERC000047
External Id	SAMEA14447254
INSDC center name	Biology Centre CAS
INSDC last update	2022-05-24T13:45:04Z
INSDC status	public
Submitter Id	JJ-LUK12B-28-5-m1-bin316
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
common name	cat scratch disease bacillus
completeness score	100
completeness software	checkm
contamination score	1.27
geographic location (latitude)	45.99864599
geographic location (longitude)	8.97621
metagenomic source	freshwater metagenome
sample derived from	ERS11624151
scientific_name	Afipia felis
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: JJ-LUK12B-28-5-m1-bin316 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia

BioProject: PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project