Metagenome-assembled genome: ERR594344_binner23_Re... - BioSample

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Result Filters

Organism: Rheinheimera aquimaris
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Seawater was filtered from different depths to retain small cell sizes. The DNA was extracted and submitted to high throughput sequencing.
sample name	ERR594344_binner23_Refined_8
ENA first public	2024-03-18
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	ERR594344_binner23_Refined_8
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.14.1
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	97.7
completeness software	CheckM2_v1.0.1
contamination score	0.59
geographic location (latitude)	-8.91110000
geographic location (longitude)	-142.55710000
local environmental context	ocean
metagenomic source	marine metagenome
sample derived from	SAMEA2622821
scientific_name	Rheinheimera aquimaris
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594344 of study ERP001737.

Metagenome-assembled genome: ERR594344_binner23_Refined_8
Metagenome-assembled genome: ERR594344_binner23_Refined_8

biosample
BioSample links for Nucleotide (Select 2739810943) (1)
BioSample
Lateolabrax japonicus class II major histocompatibility complex transactivator (...
Lateolabrax japonicus class II major histocompatibility complex transactivator (CIITA) mRNA, complete cds
gi|2705993320|gb|PP548287.1|

Nucleotide
MAG: Rheinheimera aquimaris isolate ERR594344_binner23_Refined_8 ERZ5402530.2823...
MAG: Rheinheimera aquimaris isolate ERR594344_binner23_Refined_8 ERZ5402530.28232, whole genome shotgun sequence
gi|2739810945|ref|NZ_CAXGVQ01000026 gnl|WGS:NZ_CAXGVQ01|ERZ5402530.28232

Nucleotide
class II major histocompatibility complex transactivator [Lateolabrax japonicus]
class II major histocompatibility complex transactivator [Lateolabrax japonicus]
gi|2705993321|gb|WYD56513.1|

Protein