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Environmental/Metagenome sample for premature infant gut metagenome

Identifiers
BioSample: SAMN02316559; Sample name: infant_gut_CBrown; SRA: SRS470507
Organism
human gut metagenome
unclassified entries; unclassified sequences; metagenomes; organismal metagenomes
Package
MIMS: metagenome/environmental, human-gut; version 6.0
Attributes
investigation typemetagenome
broad-scale environmental contexthuman gut
collection date2012-02-10
local-scale environmental contexthospital
geographic locationUSA: Comer Children's Hospital at the University of Chicago
latitude and longitude41.790306, -87.6546"
environmental mediumstool
project namemetagenome reconstructed from a premature infant gut community
hostHomo sapiens
labelpremature infant gut metagenome
Description

To study the stability and function of early microbial colonizers of the premature infant gut, nine stool samples were taken during the third week of life of a premature male infant delivered via Caesarean section. Metagenomic sequences were assembled and binned into near-complete and partial genomes, enabling strain-level genomic analysis of the microbial community.

Keywords: GSC:MIxS;MIMS:6.0

BioProjects
PRJNA221500 Veillonella sp. DORA_B_18_19_23
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PRJNA221499 Veillonella sp. DORA_A_3_16_22
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PRJNA221498 Veillonella dispar DORA_11
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PRJNA221497 Varibaculum cambriense DORA_20
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PRJNA221496 Streptococcus sp. DORA_10
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PRJNA221495 Streptococcus parasanguinis DORA_23_24
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PRJNA221494 Streptococcus anginosus DORA_7
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PRJNA221493 Staphylococcus sp. DORA_6_22
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PRJNA221492 Propionibacterium sp. DORA_15
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PRJNA221491 Negativicoccus succinicivorans DORA_17_25
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PRJNA221490 Leuconostoc sp. DORA_2
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PRJNA221489 Escherichia coli DORA_B_14
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PRJNA221488 Escherichia coli DORA_A_5_14_21
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PRJNA221487 Enterococcus faecalis DORA_14
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PRJNA221486 Clostridium butyricum DORA_1
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PRJNA221485 Intestinibacter bartlettii DORA_8_9
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PRJNA221484 Actinomyces urogenitalis DORA_12
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PRJNA219732 human gut metagenome
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PRJNA215102 human gut metagenome
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Submission
University of California, Berkeley, Andrea Singh; 2013-08-13
Accession:
SAMN02316559
ID:
2316559

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