Uncultivated Lactobacillus sp. UBA5814 genome reco... - BioSample - NCBI

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Links from SRA

Uncultivated Lactobacillus sp. UBA5814 genome recovered from SRX1363837

Identifiers: BioSample: SAMN06451430; Sample name: Lactobacillus sp. UBA5814; SRA: SRS2032265

Organism: Lactobacillus sp. UBA5814
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; unclassified Lactobacillus

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	Colombia: Santander de Quilichao
isolate	UBA5814
isolation source	cassava fermentation tank
metagenome source	fermentation metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX1363837 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	84.68%
contamination_estimated	1.06%
environmental_sample	true
genome_coverage	67.79
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the fermentation metagenome reads: SRR2753156.

Description: Uncultivated genome recovered from an assembly of the SRX1363837 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06451430
ID:: 6451430

BioProject SRA Nucleotide

Supplemental Content

Related information

BioProject
BioProject links
SRA
Links to SRA experiments
Nucleotide
Nucleotide links
Assembly
Assembly

Recent activity

Clear Turn Off Turn On

Uncultivated Lactobacillus sp. UBA5814 genome recovered from SRX1363837
Uncultivated Lactobacillus sp. UBA5814 genome recovered from SRX1363837

biosample
BioSample Links for SRA (Select 3798454) (1)
BioSample
hypothetical protein DAPPUDRAFT_60299 [Daphnia pulex]
hypothetical protein DAPPUDRAFT_60299 [Daphnia pulex]
gi|321460280|gb|EFX71324.1||gnl|WGS |DAPPUDRAFT_60299

Protein
191[geneid] (310)
ClinVar
Saprolegniaceae internal transcribed spacer 2 and 28S ribosomal RNA gene, partia...
Saprolegniaceae internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence.
PopSet: 523584201

PopSet

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI > DNA & RNA > BioSample