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Animal sample from Pseudorca crassidens (false killer whale) for VGP reference genome, mPseCra1

Identifiers
BioSample: SAMN41253811; Sample name: Animal sample from Pseudorca crassidens (false killer whale) for VGP reference genome, mPseCra1; SRA: SRS22092787
Organism
Pseudorca crassidens (false killer whale)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Pseudorca
Package
Model organism or animal; version 1.0
Attributes
isolatemPseCra1
isolate name aliasTissue sample ID: RWB2019OCT31.02; Photo-ID catalog ID HIPc856 Hawai'I pelagic stock; SWFSC collection SWFSC_MMASTR_202046.
development stageadult
collection date2019-10-31
geographic locationUSA: Kona, Hawai'i
sexmale
tissueFibroblasts cultured from skin
biomaterial providerUniversity of California, San Francisco: Matthew Schmitz
cell linePCf002
collected byCascadia Research Collective, Robin W. Baird
latitude and longitude19.50622 N 156.6264 W
storage conditionsliquid nitrogen
treatmentcell culture
Description

False killer whales are social animals found globally in all tropical and subtropical oceans and generally in deep offshore waters. The false killer whale's entire body is black or dark gray, although lighter areas may occur ventrally (on its underside) between the flippers or on the sides of the head. Fishery interactions are one of the main threats facing this species. False killer whales are known to depredate (take fish and bait off of fishing lines), which can lead to hooking and/or entanglement. This is especially a concern for false killer whales that interact with the Hawai'i longline fishery (NOAA website).The tissue sample was sent to the University of California, San Francisco from Cascadia Research Collective in Hawaii in 2019 in order to establish a cell line. The sampled individual is from the pelagic population offshore of Hawai'i. The sample was cultured and frozen by Matthew Schmitz at UCSF and later provided as part of the Cetacean Genomes Project to generate a high-quality reference for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Jennifer Balacco, Giulio Formenti, and Erich D. Jarvis. This assembly is under the limited use G10K embargo policy from the date of submission: https://genome10k.ucsc.edu/data-use-policies/

BioProjects
PRJNA1139358
Retrieve all samples from this project

PRJNA1108772 Pseudorca crassidens isolate:mPseCra1
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PRJNA1108771 Pseudorca crassidens isolate:mPseCra1
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2024-05-07
Accession:
SAMN41253811
ID:
41253811

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