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BioSample

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Metagenome or environmental sample from Syntrophorhabdus sp. PtaU1.Bin058

Identifiers: BioSample: SAMN04534968; Sample name: Uncultured Syntrophorhabdus bacterium PtaU1.Bin058 draft genome from a metagenome of a lab-scale methanogenic bioreactor

Organism: Syntrophorhabdus sp. PtaU1.Bin058
cellular organisms; Bacteria; Thermodesulfobacteriota; Syntrophorhabdia; Syntrophorhabdales; Syntrophorhabdaceae; Syntrophorhabdus; unclassified Syntrophorhabdus

Package: Metagenome or environmental; version 1.0

Attributes

metagenome source	bioreactor metagenome
latitude and longitude	40.06 N 88.13 W
collection date	2014
isolate	PtaU1.Bin058
isolation source	Lab-scale methanogenic bioreactor treating purified terephthalic acid process wastewater
geographic location	USA
environmental-sample	TRUE
metagenomic	TRUE
note	This biosample is a metagenomic assembly obtained from the bioreactor metagenome BioSample: SAMN05195940.

Description: Draft genome extracted from metagenomic assembly (paired-end HiSeq2500) through binning, quality check, and manual curation. This draft genome has an estimated completeness of 87.1% with 1.29% contamination.

BioProject: PRJNA310790 sludge metagenome
Retrieve all samples from this project

Submission: University of Illinois, Masaru Nobu; 2016-03-07

Accession:: SAMN04534968
ID:: 4534968

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Metagenome or environmental sample from Syntrophorhabdus sp. PtaU1.Bin058
Metagenome or environmental sample from Syntrophorhabdus sp. PtaU1.Bin058

biosample
txid1811704[Organism] (1)
BioSample
PREDICTED: Homo sapiens MIB E3 ubiquitin protein ligase 2 (MIB2), transcript var...
PREDICTED: Homo sapiens MIB E3 ubiquitin protein ligase 2 (MIB2), transcript variant X5, mRNA
gi|2217264193|ref|XM_047446677.1|

Nucleotide
Eudyptes sp. isolate MWP2467 D-loop, partial sequence; mitochondrial
Eudyptes sp. isolate MWP2467 D-loop, partial sequence; mitochondrial
gi|1532685484|gb|MG739914.1|

Nucleotide
Metagenome or environmental sample from Syntrophorhabdus sp. PtaU1.Bin050
Metagenome or environmental sample from Syntrophorhabdus sp. PtaU1.Bin050

biosample

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