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Metagenome-assembled genome GLR1854

Identifiers
BioSample: SAMN13287955; Sample name: GLR1854
Organism
Methylococcaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; unclassified Methylococcaceae
Package
MIMAG: metagenome-assembled genome, water; version 6.0
Attributes
collection date2018/2019
depth0-25cm
elevation-1974m
broad-scale environmental contextmarine cold seep biome [ENVO:01000127] | marine bathyal zone biome [ENVO:01000026] | marine benthic biome [ENVO:01000024]
local-scale environmental contextcold seep [ENVO:01000263] | marine cold seep biome [ENVO:01000127] |
environmental mediummarine sediment [ENVO:03000033]
geographic locationNew Zealand: Hikurangi Margin
latitude and longitude41.77033333 S 176.0835 E
isolation sourceGlendhu Ridge methane seep
sample typemetagenomic assembly
metagenome sourcemarine sediment metagenome
isolateGLR1854
derived fromThis BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN12673430,SAMN12673432,SAMN12673436,SAMN12673456, SAMN12673457, and SAMN12673458
noteMetagenome-assembled genome from metagenomes SRR10375097-9 and SRR10097245-7
completeness score66.1971830985915
contamination score0
analysis project typemetagenome-assembled genome
taxa idmulti-marker approach (GTDBTk)
assembly softwareMegahit v.1.1.13
assembly qualityMedium
completeness softwareAnvi'o v6.0
number of contigs269
16S recoveredno
16S recovery softwareAnvi'o v6.0 (using Prokka v1.14.3)
decontamination softwareAnvi'o v6.0
bin parameterskmer+coverage
binning softwareAnvi'o v6.0 (using CONCOCT v1.1.0)
reassembly post binningno
total assembly size1699416
contig L507366
relative coverage Anaerobic (SRR10097246)2.95419691386819e-05
relative coverage Anoxic (SRR10375098)8.82487077866928e-06
relative coverage Infiltration (SRR10097247)0.684974988993988
relative coverage Low pH (SRR10097245)0.289272090543541
relative coverage Oxic (SRR10375099)0.0257145536225524
relative coverage Reference (SRR10375097)0
metagenomic1
environmental-sample1
Description

Keywords: GSC:MIxS;MIMAG:6.0

BioProject
PRJNA562730 marine sediment metagenome
Retrieve all samples from this project

Submission
GNS Science, Lucy Stewart; 2019-11-14
Accession:
SAMN13287955
ID:
13287955

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