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Metagenome-assembled genome GLR68

Identifiers
BioSample: SAMN13287979; Sample name: GLR68
Organism
Methylococcaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; unclassified Methylococcaceae
Package
MIMAG: metagenome-assembled genome, water; version 6.0
Attributes
collection date2018/2019
depth0-25cm
elevation-1974m
broad-scale environmental contextmarine cold seep biome [ENVO:01000127] | marine bathyal zone biome [ENVO:01000026] | marine benthic biome [ENVO:01000024]
local-scale environmental contextcold seep [ENVO:01000263] | marine cold seep biome [ENVO:01000127] |
environmental mediummarine sediment [ENVO:03000033]
geographic locationNew Zealand: Hikurangi Margin
latitude and longitude41.77033333 S 176.0835 E
isolation sourceGlendhu Ridge methane seep
sample typemetagenomic assembly
metagenome sourcemarine sediment metagenome
isolateGLR68
derived fromThis BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN12673430,SAMN12673432,SAMN12673436,SAMN12673456, SAMN12673457, and SAMN12673458
noteMetagenome-assembled genome from metagenomes SRR10375097-9 and SRR10097245-7
completeness score91.5492957746478
contamination score1.40845070422535
analysis project typemetagenome-assembled genome
taxa idmulti-marker approach (GTDBTk)
assembly softwareMegahit v.1.1.13
assembly qualityHigh
completeness softwareAnvi'o v6.0
number of contigs440
16S recoveredno
16S recovery softwareAnvi'o v6.0 (using Prokka v1.14.3)
decontamination softwareAnvi'o v6.0
bin parameterskmer+coverage
binning softwareAnvi'o v6.0 (using CONCOCT v1.1.0)
reassembly post binningno
total assembly size3018920
contig L508070
relative coverage Anaerobic (SRR10097246)0
relative coverage Anoxic (SRR10375098)0.000747707339855441
relative coverage Infiltration (SRR10097247)0
relative coverage Low pH (SRR10097245)0.000510243144987314
relative coverage Oxic (SRR10375099)0.998742049515157
relative coverage Reference (SRR10375097)0
metagenomic1
environmental-sample1
Description

Keywords: GSC:MIxS;MIMAG:6.0

BioProject
PRJNA562730 marine sediment metagenome
Retrieve all samples from this project

Submission
GNS Science, Lucy Stewart; 2019-11-14
Accession:
SAMN13287979
ID:
13287979

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