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Uncultivated Pseudomonadaceae bacterium UBA5108 genome recovered from ERX552333

Identifiers
BioSample: SAMN06456917; Sample name: Pseudomonadaceae bacterium UBA5108; SRA: SRS2030999
Organism
Pseudomonadaceae bacterium UBA5108
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; unclassified Pseudomonadaceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA5108
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX552333 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated99.38%
contamination_estimated0.52%
environmental_sampletrue
genome_coverage40.35
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR594362.
Description

Uncultivated genome recovered from an assembly of the ERX552333 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06456917
ID:
6456917

BioProject SRA Nucleotide

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