| collection date | 2018/2019 |
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| depth | 0-25cm |
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| elevation | -1974m |
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| broad-scale environmental context | marine cold seep biome [ENVO:01000127] | marine bathyal zone biome [ENVO:01000026] | marine benthic biome [ENVO:01000024] |
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| local-scale environmental context | cold seep [ENVO:01000263] | marine cold seep biome [ENVO:01000127] | |
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| environmental medium | marine sediment [ENVO:03000033] |
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| geographic location | New Zealand: Hikurangi Margin |
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| latitude and longitude | 41.77033333 S 176.0835 E |
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| isolation source | Glendhu Ridge methane seep |
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| sample type | metagenomic assembly |
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| metagenome source | marine sediment metagenome |
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| isolate | GLR1625 |
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| derived from | This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN12673430,SAMN12673432,SAMN12673436,SAMN12673456, SAMN12673457, and SAMN12673458 |
|---|
| note | Metagenome-assembled genome from metagenomes SRR10375097-9 and SRR10097245-7 |
|---|
| completeness score | 67.6056338028169 |
|---|
| contamination score | 0 |
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| analysis project type | metagenome-assembled genome |
|---|
| taxa id | multi-marker approach (GTDBTk) |
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| assembly software | Megahit v.1.1.13 |
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| assembly quality | Medium |
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| completeness software | Anvi'o v6.0 |
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| number of contigs | 616 |
|---|
| 16S recovered | no |
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| 16S recovery software | Anvi'o v6.0 (using Prokka v1.14.3) |
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| decontamination software | Anvi'o v6.0 |
|---|
| bin parameters | kmer+coverage |
|---|
| binning software | Anvi'o v6.0 (using CONCOCT v1.1.0) |
|---|
| reassembly post binning | no |
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| total assembly size | 2545096 |
|---|
| contig L50 | 4216 |
|---|
| relative coverage Anaerobic (SRR10097246) | 0.0707845775204662 |
|---|
| relative coverage Anoxic (SRR10375098) | 0.145284057722877 |
|---|
| relative coverage Infiltration (SRR10097247) | 0.0259696265243628 |
|---|
| relative coverage Low pH (SRR10097245) | 0.314099290137987 |
|---|
| relative coverage Oxic (SRR10375099) | 0.44235352872105 |
|---|
| relative coverage Reference (SRR10375097) | 0.00150891937325495 |
|---|
| metagenomic | 1 |
|---|
| environmental-sample | 1 |
|---|