Microbe sample from Lysobacterales bacterium

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Result Filters

Identifiers: BioSample: SAMN14533084; Sample name: Vazella_pourtalesii-enriched_bin10o

Organism: Lysobacterales bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; unclassified Lysobacterales

Attributes

collection date	2017
geographic location	Canada: Scotian Shelf
isolate	bin10o
host	Vazella pourtalesii
isolation source	pooled samples from sponge host and sea water
sample type	metagenomic assembly
collected by	DFO Canada
sample type	metagenomic assembly
metagenome source	marine metagenome
derived from	This BioSamples is a metagenomic assembly obtained from the marine metagenome BioSamples: SAMN14422879, SAMN14422880, SAMN14422881, SAMN14422882, SAMN14422883, SAMN14422895, SAMN14422896, SAMN14422897, SAMN14422898, SAMN14422900, SAMN14422901, and SAMN14422906
metagenomic	1
environmental-sample	1

Description: find sampling details on https://doi.pangaea.de/10.1594/PANGAEA.913907; co-assembly (megahit v1.1.3) of metagenomes from Vazella pourtalesii from the sea floor and a mooring float and respective sea water references; binning (metabat, metabat2, maxbin2), bin refinement and reassembly (SPAdes v3.12.0) in metaWRAP; trailing letter in bin name indicates assembly version (o for original, p for permissive, or s for strict); enrichment in Vazella pourtalesii or sea water determined by LDA scores with LEfSe v1.0;