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BioSample

National Center for Biotechnology Information

Identifiers: BioSample: SAMN00116777; Sample name: HMPREF9294; SRA: SRS118310

Organism: Porphyromonas asaccharolytica PR426713P-I
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas asaccharolytica

Attributes

collection date	not determined
estimated size	2199000
isolation and growth condition	not determined
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
investigation type	missing
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
project name	Porphyromonas asaccharolytica PR426713P-I
geographic location	not determined
source material identifiers	not determined
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
strain	PR426713P-I
environmental package	missing
isolation source	missing
finishing strategy (depth of coverage)	Level 2: High-Quality Draft60x;58
project_type	Reference Genome
misc_param: HMP body site	Vaginal
nucleic acid extraction	not determined
assembly	Newbler v. 2.3
misc_param: HMP supersite	urogenital_tract
sequencing method	454-GS-FLX-Titanium
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf