Molecular Pathogenesis
The five genes (COL9A1, COL9A2, COL9A3, COMP, and MATN3) in which pathogenic variants cause autosomal dominant multiple epiphyseal dysplasia (MED) encode three structural macromolecules of the cartilage extracellular matrix (type IX collagen, cartilage oligomeric matrix protein, and matrilin-3) [Unger & Hecht 2001, Briggs & Chapman 2002]. These proteins interact with each other and with type II collagen.
COL9A1, COL9A2, and COL9A3. Type IX collagen, a heterotrimer [α1(IX)α2(IX)α3(IX)] of polypeptides encoded by COL9A1, COL9A2, and COL9A3, is an integral component of cartilage and a member of the FACIT (fibril-associated collagen with interrupted triple helix) group of collagens. Type IX collagen has three collagenous (COL) domains separated by non-collagenous (NC) domains. The amino-terminal NC domain (NC4) is encoded entirely by COL9A1. The collagenous domains (COL1-COL3) are separated by four non-collagenous (NC1-NC4) domains. The COL domains closely associate with type II collagen fibrils and are thought to act as a molecular bridge between collagen fibrils and other cartilage matrix components.
All reported COL9A1-, COL9A2-, and COL9A3-related MED pathogenic variants are clustered in the splice acceptor site of exon 8 of COL9A1, the splice donor site of exon 3 of COL9A2, or the splice acceptor site of exon 3 of COL9A3. These pathogenic variants result in deletions located in a similar region of the COL3 domain of type IX collagen, demonstrating the importance of this domain. Studies have confirmed that a COL9A3 pathogenic variant abolishes binding of type IX collagen to matrilin-3 and type II collagen [Fresquet et al 2007].
COMP encodes cartilage oligomeric matrix protein (COMP), a pentameric adhesive glycoprotein found predominantly in the extracellular matrix (ECM) of cartilage but also in tendons and ligaments. It is a member of the thrombospondin protein family comprising:
A coiled-coil oligomerization domain;
Four type II (EGF-like) repeats;
Eight type III (CaM-like) repeats;
A large COOH-terminal globular domain.
The type III repeats bind Ca2+ cooperatively and with high affinity, while the C-terminal globular domain has the ability to interact with both fibrillar (type I, II, and III) and non-fibrillar collagens, such as type IX [Rosenberg et al 1998, Holden et al 2001, Thur et al 2001, Mann et al 2004], as well as fibronectin [Di Cesare et al 2002].
All MED-related COMP pathogenic variants are missense variants or small in-frame deletions and duplications found in the type III repeats (85%) or C-terminal domain (15%) [Kennedy et al 2005a, Kennedy et al 2005b, Jackson et al 2012]. Approximately 70% of MED-related COMP pathogenic variants reside in exons 10, 11, and 13 [Kennedy et al 2005b, Jackson et al 2012]; MED-related COMP variants are not found in exons 15, 17, or 19.
MATN3 encodes matrilin-3, the third member of a family of oligomeric multidomain ECM proteins comprising matrilin-1, matrilin-2, matrilin-3, and matrilin-4 [Wagener et al 2005]. The domain structure of the matrilin family of proteins is similar; each consists of:
Matrilins have been found in collagen-dependent and collagen-independent filament networks within the tissues in which they are expressed and may perform analogous functions in these different tissues. Matrilin-3 has been shown to interact with COMP and other cartilage collagens through the A domain [Mann et al 2004, Fresquet et al 2007, Fresquet et al 2008, Fresquet et al 2010].
With one exception, all MATN3-relate MED pathogenic variants are missense variants found within exon 2, which encodes the single A domain of matrilin-3. The exception is a missense variant within five residues of the A domain and may well play a role in its structure and/or function. The vast majority of A-domain variants (~70%) affect conserved residues within the six beta-strands that comprise the single beta-sheet of the A domain. Other variants have been described in the alpha-helix regions of the A domain (~30%).
MATN3 pathogenic variants appear to delay the folding of the A domain, which elicits an unfolded protein response and results in the retention of abnormal matrilin-3 in the rough endoplasmic reticulum. This results in a reduction in chondrocyte proliferation and dysregulated apoptosis [Leighton et al 2007, Nundlall et al 2010]. Retained abnormal matrilin-3 forms non-native disulphide-bonded aggregates.
Table 6.
Autosomal Dominant Multiple Epiphyseal Dysplasia: Mechanism of Disease Causation
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Gene 1 | Special Consideration |
---|
COL9A1
| In-frame exon-skipping COL9 pathogenic variants result in deletion of amino acids from the COL3 domain, which may affect its ability to fold correctly or interact w/other components of the cartilage ECM [Fresquet et al 2007]. |
COL9A2
|
COL9A3
|
COMP
| Pathogenic variants in the type III repeats result in misfolding of the protein & its retention in the rER of chondrocytes, causing reduced chondrocyte proliferation & increased/dysregulated cell death [Suleman et al 2012]. The effect of pathogenic variants in the C-terminal domain is not fully resolved, but these do not always prevent the secretion of abnormal protein [Piróg-Garcia et al 2007]. |
MATN3
| MATN3 pathogenic variants delay protein folding, which elicits an unfolded protein response & results in the retention of abnormal matrilin-3 in the rER. |
ECM = extracellular matrix; rER = rough endoplasmic reticulum
- 1.
Genes from Table 1 in alphabetic order.
Table 7.
Pathogenic Variants Referenced in This GeneReview by Gene
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Variants listed in the table have been provided by the authors. GeneReviews staff have not independently verified the classification of variants.
GeneReviews follows the standard naming conventions of the Human Genome Variation Society (varnomen.hgvs.org). See Quick Reference for an explanation of nomenclature.
- 1.
Genes from Table 1 are in alphabetic order.