Molecular Pathogenesis
RET produces a receptor tyrosine kinase with extracellular, transmembrane, and intracellular domains. The extracellular domain consists of a calcium-binding cadherin-like region and a cysteine-rich region. The encoded protein plays a role in signal transduction by interaction with the glial-derived neurotropic factor (GDNF) family of ligands: GDNF, neurturin, persephin, and artemin. Ligand interaction is via the ligand-binding GDNF family receptors (GFRα) to which RET protein binds the encoded protein complexes. Formation of a complex containing two RET protein molecules leads to RET autophosphorylation and intracellular signaling whereby phosphorylated tyrosines become docking sites for intracellular signaling proteins [Santoro et al 2004]. The RET tyrosine kinase catalytic core, which is located in the intracellular domain, interacts with the docking protein FRS2 and causes downstream activation of the mitogen-activated protein (MAP) kinase signaling cascade [Manié et al 2001]. Pathogenic variants causing MEN2 lead to constitutive activation (i.e., gain of function) of tyrosine kinase.
Gene structure. The RET proto-oncogene comprises 20 exons; the first exon is noncoding (NM_020975.5). Normal tissues contain transcripts of several lengths [Takaya et al 1996]. The variant NM_020975.5 is the longest transcript and encodes the longer isoform (a), also known as Ret51. For a detailed summary of gene and protein information, see Table A, Gene.
Putative benign/modifier/predisposition variants. Benign variants as well as variants of uncertain significance have been described. See Table A, Locus Specific for a database of RET variants [Margraf et al 2009].
It is speculated that some rare variants (e.g., p.Val648Ile) may modify the phenotype when inherited with a pathogenic variant [Nunes et al 2002].
Evidence suggests that other rare allelic variants may be predisposition factors. For example, p.Gly691Ser and p.Ser904= may be low-penetrance risk factors for development of medullary thyroid carcinoma (MTC) [Robledo et al 2003, Elisei et al 2004] and may predispose individuals with a pathogenic variant to an earlier age of onset of MEN2A [Gil et al 2002, Robledo et al 2003, Cardot-Bauters et al 2008]; however, this finding was not replicated in a larger study [Lesueur et al 2006]. The p.Ser836= variant has been associated with an increased risk for nonfamilial MTC in at least two studies [Gimm et al 1999, Ruiz et al 2001] but not in another [Berard et al 2004]. A meta-analysis of six allelic variants found a modest nonfamilial MTC association with p.Ser836= and a strong association with the promoter benign variant IVS1-126G>T [Figlioli et al 2013].
Although the variants p.Ser649Leu and p.Tyr791Phe were recently reclassified as non-pathogenic, whether they act as modifiers of risk is not known [Erlic et al 2010].
Table 4.
Putative RET Benign/Modifier/Predisposition Variants Discussed in This GeneReview
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Predicted Protein Change | DNA Nucleotide Change | Reference Sequences |
---|
p.Val648Ile | c.1842G>A |
NM_020975.5
NP_066124.1
|
p.Gly691Ser | c.2071G>A |
p.Ser836= 1 | c.2508C>T |
p.Ser904= 1 | c.2712C>G |
- 1.
Designates that protein has not been analyzed, but no change in the amino acid is expected
Pathogenic variants. The most common pathogenic variants are non-conservative substitutions located in one of six cysteine codons in the extracellular domain of the encoded protein. They include codons 609, 611, 618, and 620 in exon 10 and codons 630 and 634 in exon 11 [Takahashi et al 1998]. All of these variants have been identified in families with MEN2A and some have been identified in families with FMTC. Pathogenic variants in these sites have been detected in 98% of families with MEN2A [Eng et al 1996]. See Table A for a database of RET variants [Margraf et al 2009].
The risk for aggressive MTC, pheochromocytoma, and hyperparathyroidism can be estimated based on genotype. See Table 3 for management recommendations.
Approximately 95% of all individuals with the MEN2B phenotype have a pathogenic variant in the tyrosine kinase domain of RET at codon 918 in exon 16, which substitutes a threonine for methionine [Eng et al 1996]. A second pathogenic variant, p.Ala883Phe, resulting from a two-nucleotide indel, has been found in 2%-3% of individuals with MEN2B [Gimm et al 1997, Smith et al 1997].
Two variants in cis configuration on one RET allele have been reported in individuals with MEN2B (see Table 5 for codon 804 in combination with 778, 805, 806, and 904) [Miyauchi et al 1999, Menko et al 2002, Cranston et al 2006, Kloos et al 2009].
In addition to the pathogenic variants in the cysteine residues in exons 10 and 11 that have been found in families with MEN2A, pathogenic variants in codons 631, 768, 790, 804, 844, and 891, and others in exons 5, 8, 10, 11, and 13-16, have been identified in a small number of families [Hofstra et al 1997, Berndt et al 1998, Kloos et al 2009, Wells et al 2015].
A pathogenic variant at codon 603 was reported in one family and appeared to be associated with both MTC and papillary thyroid cancer [Rey et al 2001]. The pathogenic variant p.Arg912Pro appeared to be associated with FMTC in two families [Jimenez et al 2004b].
Small, in-frame duplications have been reported in four families [Höppner & Ritter 1997, Höppner et al 1998, Pigny et al 1999, Niccoli-Sire et al 2003].
Rare families with two pathogenic variants in cis configuration have been reported; for example, alteration of both codons 634 and 635 in one family with MEN2A; alteration of both codons 804 and 844 in one family with FMTC [Bartsch et al 2000]; and alteration of codons 804 and 806 in an individual with MEN2B [Miyauchi et al 1999].
For families in which MEN2A and HSCR cosegregate, models to explain how the same pathogenic variant can cause gain of function and loss of function have been proposed [Takahashi et al 1999].
Table 5.
RET Pathogenic Variants Discussed in This GeneReview
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ATA Risk Level | Predicted Protein Change (Alias 1) | DNA Nucleotide Change (Alias 1) | Reference Sequences |
---|
Level D (highest risk) | p.Ala883Phe | c.2647_2648delGCinsTT |
NM_020975.5
NP_066124.1
|
p.Met918Thr | c.2752A>G |
p.[Val804Met;Glu805Lys] 2 | c.[2410G>T; c.2413G>A] 2 |
p.[Val804Met;Tyr806Cys] 2 | c.[2410G>T;2417A>G] 2 |
p.[Val804Met;Ser904Cys] 2 | c.[2410G>T;2711C>G] 2 |
Level C | p.Cys634Arg | c.1900C>T |
p.Cys634Gly | c.1900T>G |
p.Cys634Phe | c.1901G>T |
p.Cys634Ser | c.1900T>A |
p.Cys634Trp | c.1902C>G |
p.Cys634Tyr | c.1901G>A |
Level B | p.Cys609Phe | c.1826G>T |
p.Cys609Arg | c.1825T>C |
p.Cys609Gly | c.1825T>G |
p.Cys609Ser | c.1825T>A |
p.Cys609Tyr | c.1826G>A |
p.Cys611Arg | c.1831T>C |
p.Cys611Gly | c.1831T>G |
p.Cys611Phe | c.1832G>T |
p.Cys611Ser | c.1831T>A |
p.Cys611Trp | c.1833C>G |
p.Cys611Tyr | c.1832G>A |
p.Cys618Arg | c.1825T>C |
p.Cys618Gly | c.1852T>G |
p.Cys618Phe | c.1853G>T |
p.Cys618Ser | c.1852T>A |
p.Cys618Tyr | c.1853G>A |
p.Cys620Arg | c.1858T>C |
p.Cys620Gly | c.1858T>G |
p.Cys620Phe | c.1859G>T |
p.Cys620Ser | c.1858T>A |
p.Cys620Trp | c.1860C>G |
p.Cys620Tyr | c.1859G>A |
p.Cys630Arg | c.1888T>C |
p.Cys630Phe | c.1889G>T |
p.Cys630Ser | c.1889G>C |
p.Cys630Tyr | c.1889G>A |
p.Asp631Tyr | c.1891G>T |
p.Cys634_Thr636dup (633/9 bp dup) | c.1900_1908dupTGCCGCACG |
p.Cys634_Arg635insHisGluLeuCys (634/12 bp dup) | c.1892_1903dupACGAGCTGTGCC |
p.[Val804Met;Val778Ile] 2 | c.[2410G>T;c.2332G>A] 2 |
Level A | p.Gly321Arg | |
p.Glu529_Cys531dup (531/9 bp dup) | c.1585_1593dupGAGGAGTGT |
p.Gly532dup | |
p.Cys515Ser | |
p.Gly533Cys | c.1597G>T |
p.Arg600Gln | c.1799G>A |
p.Lys603Glu | c.1807A>C |
p.Tyr606Cys | c.1817A>G |
p.635/insert ELCR;p.Thr636Pro | |
p.Lys666Glu | c.1996A>G |
p.Glu768Asp | c.2304G>C |
p.Asn777Ser | c.2330A>G |
p.Leu790Phe | c.2379G>C |
p.Val804Leu | c.2410G>C |
p.Val804Met | c.2410G>A |
p.Gly819Lys | |
p.Arg833Cys | c.2497C>T |
p.Arg844Gln | c.2531G>A |
p.Arg866Trp | |
p.Ser891Ala | c.2671T>G |
p.Arg912Pro | c.2735G>C |
ATA = American Thyroid Association
See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (varnomen.hgvs.org).
Variant designations are updated to current naming conventions; therefore, not all directly correlate to the nomenclature in their original publications.
- 1.
Variant designation that does not conform to current naming conventions
- 2.
Two variants identified in a DNA sequence or a protein that derive from one chromosome (in
cis)
Normal gene product. The transcript variant NM_020975.5 encodes NP_066124.1, the 1,114-amino acid proto-oncogene tryrosine-protein kinase receptor RET isoform (a) precursor, also known as Ret 51. For RET function, see Molecular Pathogenesis. For a detailed summary of gene, transcript, and protein information, see Table A, Gene.
Abnormal gene product. Pathogenic variants in the cysteine-rich extracellular domain (codons 609, 611, 618, 620, and 634) cause ligand-independent RET dimerization, leading to constitutive activation (i.e., gain of function) of tyrosine kinase [Takahashi et al 1998].
The pathogenic variant in codon 918 that causes 95% of the MEN2B phenotype lies within the catalytic core of the tyrosine kinase and causes a constitutive activation (i.e., gain of function) of the RET kinase in its monomeric state, independent of the normal ligand-binding and dimerization steps [Takahashi et al 1998].
In contrast to the activating pathogenic variants in MEN2, pathogenic variants that cause Hirschsprung disease result in a decrease in the transforming activity of RET [Iwashita et al 1996] (see Genetically Related Disorders).