Conserved Protein Domain Family
PRK04309

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PRK04309: PRK04309 
DNA-directed RNA polymerase subunit A''; Validated
Statistics
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PSSM-Id: 235277
Aligned: 68 rows
Threshold Bit Score: 472.023
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
118431617   1 MKEFKTLEESLEAARYI-LPESLYKELVETVEKEd-gLSEEDKISVVKETIRTYLRSLAQPGEAVGTVAAQSIGEPGTQM 78 
171186407   1 ---MISKQELLAKISAV-LPQPLYRELENAVKD----LDEERALRLIHRVLRLYITSLVDPGEAIGIVTAQSIGEPGTQM 72 
18312087    1 ---MISREELLSKLSQV-LPQPLYKEVEEAVRD----LDDEKALRLVYRVLKLYVTSLIDPGEAIGIVTAQSIGEPGTQM 72 
126460696   1 MGAVISKQELLAKIRSI-LPQPIYKELEAAVSE----LDEERATKLIYRVLRLYLASLIDPGEAIGIVTAQSIGEPGTQM 75 
145592517   1 ---MISKQELLAKIQHV-LPRPLYAEIENAVKD----LDDERALRLIYRVLRLYLNSLIDPGEAIGIVTAQSIGEPGTQM 72 
119872215   1 ---MISKQEVLERVAKI-LPQPIYKELENVVKD----LDEEKALRIIYRVLKLYITSLIDPGEAIGIITAQSIGEPSTQM 72 
229579768   4 EKDKSYLEEKVKQASNI-LPQKIVEDLKNLISNKevlVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQM 82 
146302820   4 NTDNEYLEQKLSELSKK-VPASIISKLRESITNSpieITRDEIDKIIEIVMKDYLSSLVHPGEAIGVVAAQSIGEPGTQM 82 
159040773   5 YLSQEEVRSRIETLKEV-LPSRLVNELLNRLNNVk--LSDRQLERVMKAVVAEYYKSIVDPGEAIGIVTAQSVGEPSTQM 81 
41615213    1 ---------------MSlLPEKILQEFEEMAKKYk--IRGKKKEQLLKKLEEKYLNSLIDPQEPIGIITAQSFGEPATQM 63 
118431617  79 TLRTFHYAGIMEFDVTLGLPRLIEIVDAKQTPSQPLMYIYLKDEYAKDLEKAKEAARKIEYTTLEKIIDNIEWDLGDRVV 158
171186407  73 ILRSFHYAGLREFSMARGLPRLIEIVDARRTPSTPLMFVYLKPPYNKNREAAETVAKRIQQVTLEMLAKEVDVDYVAGTI 152
18312087   73 ILRSFHYAGLREFSMARGLPRLIEVVDARRTPSTPLMYVYLKPPYNKSREAAESVAKKIQQVTLETLAKEVDVDYVAGTV 152
126460696  76 ILRSFHYAGLREFSMARGLPRLIEVVDARRHPSTPLMFVYLKPPYNKTREAAEKVAKQIQQVTLEMLTKEIDVDYVSGTI 155
145592517  73 ILRSFHYAGLREFSMARGLPRLIEVVDARRTPSTPLMYIYLKPPHNKSREAAEAVAKKIQQVTLEMLAKEVDVDYISGAV 152
119872215  73 ILRSFHYAGLREFSMARGLPRLIEIVDARRNPSTPLMFIYLKPPYNRDREKAETVAKKIQQVTLEMLAKEIDVDYIAGTI 152
229579768  83 TLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSI 162
146302820  83 TLRTFHFAGVRELNVTLGLPRLIEIVDARKVPSTPMMTIYLNEEYAKDRDMALEVARRIEYTRVEHVVETVNLDVGGMGI 162
159040773  82 ILRTFHYAGLREFSMALGLPRLIEIIDARRKPQVPRMTIYLKPEYAHDEEKAHDVAKRIQAITIENLAKSVDVDYFNSTI 161
41615213   64 LLNAFHFAGVSELQLVTGLPRLIEILNAKKKPTIPSMTIYLEKN---DEKLAEELVNKLIEVKLSDIAKSISIDVINKRI 140
118431617 159 AIVINAEYMEDKGVTVDMVLEALDKSKlgkvvedgvreVSEGgvkKVIVYFEISdkqLPdeelfNSNAYHKVLEKLKNTY 238
171186407 153 TITLDQEQLKYRGLSLKDVERVVTKTKgk--------dMAVSm-rGSTITVSLT---TP-----DILKMRKIRDKVLQIR 215
18312087  153 TITLDQEQLKYRGLTLKDVEKIVAKAKgk--------dVAISm-rGYTITASLT---TP-----DILKIRKIKDKILQIK 215
126460696 156 SLVLDQEQLRYRGLSLKDVEKIVSKVRgk--------dLSISm-kGNVIVASLA---VP-----DILKIKKARDKLLQVK 218
145592517 153 TIELDTEQLKYRGLNIKEVEKIVSKARgk--------dLSISf-rGHTITVTLT---SP-----DIFKLRKVRDKILQIK 215
119872215 153 TITLDQEQLKYRGLSLKDVERVVTKTKgk--------dFTVSm-rGHTITVSLA---TP-----DVLRIRKIRDKILQIK 215
229579768 163 ILQLDNEMLKDKGVTVDDVKKAINRLKlg--------eFVIDeseGNTLNISFAn--ID-----SIAALFKLRDKILNTK 227
146302820 163 ILKLDPVLLKDKGLSTEDVEKVIKKLKmg--------dYRVEnsdEYTIAIYFEn--ME-----TVTGLFKAREKILSTK 227
159040773 162 IITLDEDALRYRGLSVNDVKKALDRIKgka------geITVE---GNSISVTVN---AQ-----EVSALKKMRDKILQTK 224
41615213  141 IIELDQQLVKEKDITKKDLEKAFKSAKl---------kAKIE---NNTITIEAG---NK-----RPKELYLLKNKIKDLH 200
118431617 239 IKGIKGIRKVTVRREegedSYEYMLIVEGSNLREVLMLPEVDHRRSISNDIQEIAQVLGIEAARTAIIEEIKRVLEDSGL 318
171186407 216 ISGIKGIRKVVLQHDs--kNDEWYIVTEGSNLEAVLQLEEVDQSRTYSNDLHEVEEVLGIEAARALVAQEIKRVLEEQGL 293
18312087  216 ISGIKGVRKVVLQYDs--kNDEWYIVTEGTNLEAVLQLEEVDPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGL 293
126460696 219 ISGIKGIKKVVLQYDs--kNDEWYIVTEGTNLEAVLQLEEVDKARTYSNDLHEVEEVLGIEAARTLIAHEIKRVLDEQGL 296
145592517 216 VAGIKGVRKVVLQYDs--kADEWFIVTEGTNLEAVLQLEEVDATRTYSNDLHEVEEVLGIEAARALVAQEIKRVLDEQGL 293
119872215 216 IAGIKGVRKVVLQYDt--kNGEWYIITEGTNLEAVLQLEEVDATRTYSNDLHEVEEVLGIEATRTLVAQEIKRVLDEQGL 293
229579768 228 IKGIKGIKRAIVQKK----GDEYIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
146302820 228 IKGVKGIKRAIIRKK----GDEYVIITDGSNLEGVLGVKGVDVSRIETNNLHEVESVLGVEAARELITREIKRVLEEQGL 303
159040773 225 VAGIRGIKKALVMKTd---NNEYVIYTEGTNLEAVLLLDEVDSTRTISHDIHEVAEVLGIEAARTMIMRELKAVLDDQGL 301
41615213  201 IKGVKGIKYAMITRE----NDELVIKTFGSNLKEVLKMKGIDKTRTTTNDIHEIAKVLGIDAAREAIIEEIQKVLEEQGL 276
118431617 319 DVDIRHLMLIADLMTWPGYVRQIGRLGVVGEKPSPLARAAFEVTVKQLYEAAVWGEEEEFAGVTENIIAGLPPRVGTGSV 398
171186407 294 DVDIRHMYLVADTMTWSGRLKPIGRHGVVGAKESPLARAAFEVTVKTLVEASVRGEEEQFKGVVENIVAGRYVPVGTGIV 373
18312087  294 DVDIRHMYLVADAMTWSGRLRPIGRHGVVGSKESPLARAAFEVTVKTLIEASVRGEDELFKGVVESIIAGKYVPIGTGIV 373
126460696 297 DVDIRHMYLVADAMTWSGRVRPIGRHGVVGAKESPLARAAFEVTVKTLIEAAVRGEEERFKGVVENIIAGKHVPIGTGIV 376
145592517 294 DVDIRHMYMVADTMTWSGRLRPIGRHGVVGTKESPLARAAFEVTVKTLIEASVRGEEEAFKGVVESIIAGKYIPIGTGIV 373
119872215 294 DVDIRHMYLVADAMTWSGKLRPIGRHGVVGTKESPLARAAFEVTVKTLIEAAVRGEEEKFKGVVESIIAGKYIPVGTGIV 373
229579768 304 DVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMV 383
146302820 304 DVDIRHIELVSDIMTRTGEVRQIGRHGVTGEKTSVLARAAFEVTVKHLLDAAARGDMEEFKGVVENIIIGQPIKLGTGMV 383
159040773 302 DVDTRHLMMVADVMTWDGKVRQIGRHGVAGQKVSPLARAAFEVTVKNLIEAAYMGESEKFKGVVENIISGRYVPIGTGYV 381
41615213  277 EIDVRYLLLIADVMTYYGEVLGFTRHGLMERKPSPLERATFEVPFKNLADAALLGEKDDLRAVIVNVLINQPAPMGTGRI 356
118431617 399 LLRMGAARK 407
171186407 374 RLLMQF--- 379
18312087  374 RLLMQF--- 379
126460696 377 KLLMRF--- 382
145592517 374 RLLMQF--- 379
119872215 374 RLLMQF--- 379
229579768 384 ELTMRPILR 392
146302820 384 ELLMRPANR 392
159040773 382 ELMLEHP-- 388
41615213  357 KLVFDEKKF 365
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