6X6J,6X6J,6X6J,6X6J


Conserved Protein Domain Family
CagY_M
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pfam07337: CagY_M 
DC-EC Repeat
This repeat is found in the CagY proteins - part of the CAG pathogenicity island - and involved in delivery of the protein CagA into host cells. It forms part of a surface needle structure, and this repeat may form an alpha-helical rod structure. A conserved -DC- and -EC- can be seen in regularly spaced in the alignment.
Links
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Statistics
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PSSM-Id: 284699
Aligned: 12 rows
Threshold Bit Score: 30.2067
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6X6J_AY 1204 AYKDCLSQARNEEERR---ACEKLLTPEARKLLEQ 1235
O25262   622 AYKDCVSKARNEKEKQ---ECEKLLTPEARKKLEQ 653  Helicobacter pylori
O25262  1204 AYKDCLSQARNEEERR---ACEKLLTPEARKLLEQ 1235 Helicobacter pylori
O25262   691 AYKDCVSQAKTEAEKK---ECEKLLTPEAKKLLEE 722  Helicobacter pylori
O25262   553 EYKDCIKNAKTEAEKN---KCLKGLSKEAIERLKQ 584  Helicobacter pylori
O25262   585 QALDCLKNAKTDEERN---ECLKNIPQDLQKELLa 616  Helicobacter pylori
O25262  1275 qVLNCLEKAGNEEERK---ACLKNLPKDLQENILa 1306 Helicobacter pylori
O25262  1390 AIKDCLKNA-DPNDRAaimKCLDGLSDEEKLKYLQ 1423 Helicobacter pylori
O25262  1477 QASECLDNLDDPTDQEaieQCLEGLSDSERALILG 1511 Helicobacter pylori
6X6J_AY  553 EYKDCIKNAKTEAEKN---KCLKGLSKEAIERLKQ 584 
6X6J_AY  585 QALDCLKNAKTDEERN---ECLKNIPQDLQKELLa 616 
6X6J_AY 1275 QVLNCLEKAGNEEERK---ACLKNLPKDLQENILa 1306
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