1YF2,1YF2


Conserved Protein Domain Family
Methylase_S

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pfam01420: Methylase_S 
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Type I restriction modification DNA specificity domain
This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.
Statistics
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PSSM-Id: 396139
Aligned: 31 rows
Threshold Bit Score: 88.1811
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1YF2_B 225 PEDWEVFEIKDIFEV--KTGTTPSTKksEYWENGEINWITPLdLSRLnekiyigsserkVTKIALEKCNLNLIP-KGSII 301 Methanocaldococcus ja...
Q1WR64 216 NGKKVNVSNDGLFNIm-STKKKINAN--TITFGGKYPYVARG-ENQN------------GIRGYINFDENYLNP-EKTIS 278 Lactobacillus salivar...
Q88AU8  13 YVTSVDGRQAGVFHA--HKGRRLIA---AHRKAGTTPFVGAS-RVNN---------------SITGFADTPALFpGGWIT 71  Pseudomonas syringae ...
Q88AU8 192 ELNYMPMFITDVFESmnAAGKWFDFAkaCLSGKPFAPYIARSgGGNG-------------VGSFVPHQGFAPPNaGNAIT 258 Pseudomonas syringae ...
Q1WR64   1 MVKFQKFRIGDLFTA--ESGDTDLKK--VDIENNGVPVITSGvQNYG--------------ILGLATRKAKVIP-KNTIT 61  Lactobacillus salivar...
O26006 202 glTWQSFRLGDLFEI--EKTLSFNKD--ALTQGEDYDYITRT-SQNQ------------GVLQTTGFVNAENL--NPPFT 262 Helicobacter pylori
P75159  10 NSNWTKKTLGSLFEL--KKGEMLEKE--LLAPDGKYEYFNGG-------------------IKASGRTNEFNTF-KNTIS 65  Mycoplasma pneumoniae...
Q1GA73 196 sDEWEERKLGDIAPL--RGGFAFKSS--KFRNTGV-PIVRISnILSSgevg-----gdfAYYDEQDKDDKYILPdKSAVL 265 Lactobacillus delbrue...
Q9CHS0 228 aDDWEERKLGEVATF--LNGRAYKQD--ELLDSGKYKVLRVGnFYTNd----------sWYYSNMELGDKYYVD-KGDLV 292 Lactococcus lactis su...
P06187   7 PEGWATSTINEMCNL----NPKLKLD--DDLDVGFMPMAGVP-TTYLgkc------nfeTKKWSEVKKGFTQFQ-NDDVI 72  Salmonella enterica s...
1YF2_B 302 ISTR--------APVGYVAVLTVe----STFNQGCKGLFQknnDSVNt--EFYAYYLKFKKN------LLENL-----SG 356 Methanocaldococcus ja...
Q1WR64 279 FGQ----------DTATMFYQPKa----YFTGDKIQVFSLnnkYGKLn--ENIALYLIAAVK------RALV------NF 330 Lactobacillus salivar...
Q88AU8  72 LIYNg------dGGTGHAKYQPAp----FNASDDVIALEPi-sKQAT---EPALLLIASMLT------LQCVP-----KF 126 Pseudomonas syringae ...
Q88AU8 259 IGV----------STSTVFYQPVp----FYTSKEIQVLR----HHKLt--ADSGLILVALLR------EQMG------KF 306 Pseudomonas syringae ...
Q1WR64  62 VD-----------MFGNVYFRDFe----YKMVTHARVFSLi-pKQNIt--RSIGLYFQTCLS------KHKR------KF 111 Lactobacillus salivar...
O26006 263 WSLG--------LLQMDFFYRKKs----WYAGQFMRKITPkteI-ENkidLRIANYFTTLLN------ALKRP------L 317 Helicobacter pylori
P75159  66 IIIG--------GSCGYVRLADKd----YFCGQSSCTLTVldpLEIDl--KFAYYALKSQEE------KITSL-----AS 120 Mycoplasma pneumoniae...
Q1GA73 266 AMSG--------ATTGKVAILSQtdydkVYQNQRVGYFQPv--------dYIDYGFISTIVRselfmmQLESV-----LV 324 Lactobacillus delbrue...
Q9CHS0 293 YTWS--------ATFGPHIWSGEk----VIYHYHIWKVELs--KFLDr--NFTLQLLEADKA------RLLSS-----TN 345 Lactococcus lactis su...
P06187  73 FAKItpcfengkAVVIKEFPNGYg-----AGSTEYYVLRSi--NGLI---NPHWLFALVKTK------DFLTNgalnmSG 136 Salmonella enterica s...
1YF2_B 357 GSTFKELSKSMLENFKIPLPp-lEe------QKQIAKILSSVDKsiELKK-QKKEKLQR 407 Methanocaldococcus jannaschii DSM 2661
Q1WR64 331 AWGQSSFALEAISELNITLPi-dNn------NQLHLDYMENYIR--AIEKlTIKDVVEY 380 Lactobacillus salivarius UCC118
Q88AU8 127 GFGY-KLTLHRLDRQKIMIPvltNad---geQVVNWSGLTRHGK-------RLLNEAKT 174 Pseudomonas syringae pv. tomato
Q88AU8 307 QWGN-GASLERLKATRIMVPamvGad---geDVVDWDGLSRYGR-------ALRARVEL 354 Pseudomonas syringae pv. tomato
Q1WR64 112 SYDN-MCVFTKLENETIELPi-aDa------GKLDVEFIENYIR--QLEA-DRLQQLEA 159 Lactobacillus salivarius UCC118
O26006 318 LSVLVRDIDKTFREQKIQLPl-kPtaktqtlDGIDFDFMHTLIN--ALMK-QTIQgvaq 372 Helicobacter pylori
P75159 121 GTTIKNIRLSDLKDLPIPLVksiQd------QRTIAHALSVFDL--RIEHlNELIEVNR 171 Mycoplasma pneumoniae M129
Q1GA73 325 SGAQPNVSSEEIDSFNFMIPilvQe------QQKIGQFFKQLDDtiALHQ-QKINnins 376 Lactobacillus delbrueckii subsp. bulgaricu...
Q9CHS0 346 GSTMIHVTKGDMESKIVSIPn-iDe------QKQIGSFFKQLDNtiTLHQ-RKLDLLKE 396 Lactococcus lactis subsp. lactis
P06187 137 SVGHKRVTKEFLENYGVPVPp-lAe------QKVIAEKLDTLLAqvDSTK-ARLEQIPQ 187 Salmonella enterica subsp. enterica serova...
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