Conserved Protein Domain Family
SSL1

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COG5151: SSL1 
RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 227480
Aligned: 3 rows
Threshold Bit Score: 548.059
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
417813    21 RTKRQVHFDGegdDRVDQQQQQHSSshrdRDKHVQRKKKKrlsnrnlqgSNGGYAWEDEIKRSWDLVKVDDEGDMASLVA 100 baker's yeast
19074105   1 -------------------------------------------------MAKQFSWEQEYKRTWEDRNDRK-------VN 24  Encephalitozoon cun...
19075300   1 MNENQKSFDS---DKSESEDEQKNG----RVKVRSRKTDD----------NEGYTWEGEYQRSWDIVQEDAEGSLVGVIA 63  fission yeast
417813   101 SIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQ 180 baker's yeast
19074105  25 EFNLETEAPYSNNR-----KGIVRHLHIIIDVSEAIDKSDFLPTFRANVTKVLEGFIPSFYSENPLSTLSFLSIRDVCVK 99  Encephalitozoon cun...
19075300  64 GLIQSGKRKRLLRDTTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAH 143 fission yeast
417813   181 LVSQVSGNPQDHIDALKSIRkqEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIR 260 baker's yeast
19074105 100 YTSSMDIDIHAFLGQTGSKW-------FSLLNGLEGS-IEVMKNTMH-VKEILVIVASTSTRDPHGYAEVLAKLRAYNIK 170 Encephalitozoon cun...
19075300 144 RITDLHGNPQSHIQKLKSLR--DCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIR 221 fission yeast
417813   261 VKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKIN-KGFTLVKMGFPTRIFEDTPTFCSCH 339 baker's yeast
19074105 171 VHFISLCGEITLYKSISKAT----EGRFYVPVDAGHLSAIMRELSHPTDFNGTK---LSLVKIGFPSPMME--PSVCACH 241 Encephalitozoon cun...
19075300 222 VRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAKtTDASLVMMGFPSKVVEQLPSLCACH 301 fission yeast
417813   340 SKLVYGGYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTTEKFRSEDCFSCQSRFPILKNHKNG 419 baker's yeast
19074105 242 LEVKGAGYECPVCKTMVCSLPISCPICSTQLVSTLNLSKSLRFLYPLRPFVEKAEGT------CRVCQG----------- 304 Encephalitozoon cun...
19075300 302 SIPSRGGFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEIPWSANPKSTHCFACQLPFPKPPVSPFD 381 fission yeast
417813   420 KLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCESKPV 459 baker's yeast
19074105 305 ----KGAYQCELCKSTFCSYCNRLIHNTLSFCIYCELPHN 340 Encephalitozoon cuniculi
19075300 382 ESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQCSGN 421 fission yeast
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