Conserved Protein Domain Family
PRK12678

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PRK12678: PRK12678 
transcription termination factor Rho; Provisional
Statistics
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PSSM-Id: 237171
Aligned: 76 rows
Threshold Bit Score: 723.616
Created: 9-Dec-2010
Updated: 17-Jan-2013
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
170781876   8 ATTADLNALRATTADLNALRVSQLQAIASELGIPGGSKLRKGELVTAISEIQAARgitapaaetapeatapaeagdaapa 87 
219683150   1 ---------MADSQDLSKMKLPELKEIAKELGLRGLSAKRKGDLVAAIEEARAKQ------------------------- 46 
241196889   1 ------------------MKLPELKEIAKELGLRGLSAKRKGDLVAAIEEARAKQ------------------------- 37 
241191484   1 ------------------MKLPELKEIAKELGLRGLSAKRKGDLVAAIEEARAKQ------------------------- 37 
119026472   3 VEAKERQLPVATSPNLDDMKLPELKELAKQMGLRGVSTMRKTELIATLQAARSGGqa----------------------- 59 
213691185   1 ---------MANSQNLEDMKLPELKELAKQMGLRGTSTMRKPELRATLQAARNGGeppagvtvr---------------- 55 
283456816   1 ---------MATSPNLEDMKLPELKELAKQMGLRGTSTMRKPELLATLRAARSGG------------------------- 46 
283782623   1 ---------MATGQNLEKMKLSELKDLAKQMGLRGTSTMRKPELVATLTAARNGG------------------------- 46 
302872101   1 -------MPGSLEEFLKGKSIIELREIAKSLGIQKYSLLKKGELMEAIKNFLGSS------------------------- 48 
222529055   1 -------MPGSLDEFLKGKSIIELREIAKSLGIQKYSLLKKGELMEAIRNFLGSS------------------------- 48 
170781876  88 avepsepsapveeapasepvvadadaaPAAAAAPAADTTPADTTPAEAPaadapaeqparagrgsrrastarivperiae 167
219683150  47 -----------------------------SSAKSETAPAQAEQPAGHDDavsvp-------------------------- 71 
241196889  38 -----------------------------SSAKSETAPAQAEQPAGHDDavsvp-------------------------- 62 
241191484  38 -----------------------------SSAKSETAPAQAEQPAGHDDavsvp-------------------------- 62 
119026472  60 -------------------------paGVTVRAPKSAPAADAEVKSAKD------------------------------- 83 
213691185  56 -------------------apkaaktaKVVKAPQPDAAEASTTDNADAAtqsla-------------------------- 90 
283456816  47 ---------------------------EAPAGVTVRTPKGTRAAKPAVDadaav-------------------------- 73 
283782623     --------------------------------------------------------------------------------    
302872101     --------------------------------------------------------------------------------    
222529055     --------------------------------------------------------------------------------    
170781876 168 tieapaaepagtgleariaeatsgsapaatqaprteaparsgrgsrratssgvvdpaaEAPRQAAQHVNSGQTADQLVPA 247
219683150  72 ------------------------------------------------------vrktGARRVVRKAGEPKAVEESAAEQ 97 
241196889  63 ------------------------------------------------------vrktGARRVVRKAGEPKAVEESAAEQ 88 
241191484  63 ------------------------------------------------------vrktGARRVVRKAGEPKAVEESAAEQ 88 
119026472  84 ----------------------------------------------------------KKADEAKQEERPVRAKQAKSAE 105
213691185  91 ------------------------------------------------------papaATEPQLDLPLPVADDAKKDETE 116
283456816  74 ------------------------------------------------------deldVKPAESTEPAEQAHAEMPADKP 99 
283782623  47 ---------------------------------------------------------------------EAPAGVSVRVP 57 
302872101     --------------------------------------------------------------------------------    
222529055     --------------------------------------------------------------------------------    
170781876 248 DAQANPQAPAADASAAADAPAEEQAP------------AQRSGRGRRRGGRDAQDGADRGAAQDAPATPDADETPAAsep 315
219683150  98 PTQVKEEGHAALPAEEEMTQIRGRRV------------RGKRRQMESADQAATNGETSAAEQLLSTLNLPEHAERGGeqp 165
241196889  89 PTQVKEEGHAALPAEEEMTQIRGRRV------------RGKRRQMESADQAATNGETSAAEQLLSTLNLPEHAERGGeqp 156
241191484  89 PTQVKEEGHAALPAEEEMTQIRGRRV------------RGKRRQMESADQAATNGETSAAEQLLSTLNLPEHAERGGeqp 156
119026472 106 SSEVADAVAAVDALKPNDEAPKRRRH------------RDAEAGADLLAELGLDDAAPKQDDRRRRRDDDRRDDFEP--- 170
213691185 117 PRRTRRKAADDAAFEPRAARRRRDDD------------QSDFARRKPRKKADEAGDLLATLDLGDAAPTERRRERHEdve 184
283456816 100 AGRRKKAVKASTEPAADESPADSAEAkaavealdalggAPKQRRERRKRRDAEGGADLLAELDIDGAQPKQEDRRRR--- 176
283782623  58 RDVVNANKTADTSTDIEDVRSSKDNSdlealevlvpnaASDRRYRDEEDFGNKNYRRDANRNNTFQRRRSSEDRNDN--- 134
302872101  49 --------------------------------------EEDATVLEGIGKKEKGRRGRKKKSETAEVQQTFELKSEE--- 87 
222529055  49 ---------------KEDATVLEGIG------------KKEKGRRGRKKKSEIAEVQQTFELKSEELQSKVGETNEK--- 98 
170781876 316 adrQRDDRQRDDRDADDQGGRRDDQGREGREGGRNRSRNRRNRDRGRDQDDQQQNGRDQAPREQAPREPDADDEAQEEAR 395
219683150 166 rrrRGAVDSLPTRRRAGAAAVREPDAEAKPDLDDILSSLPLSANDDESDERHEEHAHRRGERGSRTNDRSNARADRENRQ 245
241196889 157 rrrRGAVDSLPTRRRAGAAAVREPDAEAKPDLDDILSSLPLSANDDESDERHEEHAHRRGERGSRTNDRSNARADRENRQ 236
241191484 157 rrrRGAVDSLPTRRRAGAAAVREPDAEAKPDLDDILSSLPLSANDDESDERHEEHAHRRGERGSRTNDRSNARADRENRQ 236
119026472 171 ---RRRRRVADGPKNEDVVRDLDDILATLPSQEDADDDKRRDETEDNEYRHSRGRNDRRGRRMRVRDRDYDERDERRGRG 247
213691185 185 vplIRRVRDDEDEQPRRRRRTAENSEETVRDLDDILATLPTQKHEETAEDGEQNDDHEFVRRNRRDRSDRNDRDNRNDR- 263
283456816 177 ---RKDDFDNEPRRRRRTPVEETKDEDVVRDLDDILAALPAQNDAEDNHHANAEDGEYARHGRGRNERDRNNDRTDRRGR 253
283782623 135 ---RDRREDGMDSHELDQILATLPGEDSHAEGEQRRQRVASRDFDREEQQNRADRFQRRMRGRARDYDESRSDYSDRQNR 211
302872101  88 ---QESKLEETEEKEEASLDEMENKEEDNIKEQTLSQDTQKEEKTEKPVDVSLNEENKEESKV----------------- 147
222529055  99 ---EEERPSEMENKEEDNIKEQTLSEDIQKEEEKTEMPTDVSLNEEKKEESKV--------------------------- 148
170781876 396 TGRQrqnsrgqgdrqQDVRADqaradlgrDDDRGGRSRYRDRKRG--RGQGG--------DDFEPEVTE-DDVLLPVAGI 464
219683150 246 HRRNr----------NERDYE--------EREEGNERRSRDERGNnrNERNNr-------NDRNERREEnTEDLVEVGGI 300
241196889 237 HRRNr----------NERDYE--------EREEGNERRSRDERGNnrNERNNr-------NDRNERREEnTEDLVEVGGI 291
241191484 237 HRRNr----------NERDYE--------EREEGNERRSRDERGNnrNERNNr-------NDRNERREEnTEDLVEVGGI 291
119026472 248 DRNDr----------NDRNDR---------ADRMDRNADRDQRNDrmDRADRd----------QHRDEP-KEDLVPVAGI 297
213691185 264 -----------------------------NDCRNRRMRGRDRDNAddDRRYDdrdnrsdrNDRDSRREEpQEDLVPVAGI 314
283456816 254 RMRGrdr------dfDDREDR--------RGRDSGRDVDRNERND--RNNDHa--------EREQRREEpKEDLVPVAGI 309
283782623 212 SERMdrv------erDDRDER--------RAERGERQDRNDRNVRldRDARDardsreehDLREIRREEpQEELVPVAGI 277
302872101 148 -----------------------------IELKPKKEEKREDKMQ---------------IEIPPELKE-LEGKVEIGGI 182
222529055 149 -----------------------------IELKPKKEEKREDKMQ---------------IEIPPELKE-LEGKVEIGGI 183
170781876 465 ----LDVL-----D-NYAFVRTSGYLPGTNDVYVSLGQVKKHSLRKGDAIVGAIRQPRDND-SQSRQKYNAIVKIDSVNG 533
219683150 301 ----VDVL-----D-SYAFIRTSGYLPGPNDIYVSMGQIKKYGLRKGDAVRGYTRAPHEGErRNQRQKFMPLQSITLING 370
241196889 292 ----VDVL-----D-SYAFIRTSGYLPGPNDIYVSMGQIKKYGLRKGDAVRGYTRAPHEGErRNQRQKFMPLQSITLING 361
241191484 292 ----VDVL-----D-SYAFIRTSGYLPGPNDIYVSMGQIKKYGLRKGDAVRGYTRAPHEGErRNQRQKFMPLQSITLING 361
119026472 298 ----VDVL-----D-SYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRAPREGErRNQRQKFVPLQSIDSING 367
213691185 315 ----VDVL-----D-SYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRAPREGDrRNQRQKFVPLQAIDSING 384
283456816 310 ----VDVL-----E-SYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRTPREGDrRNQRQKFVPLQSIDSING 379
283782623 278 ----VDVL-----E-SYAFVRTSGYLPGPNDVYVSMSQIKKYGLRKGDAVQGSIRAPREGDrRNQRQKFVPLQTVNSING 347
302872101 183 gegvLEIIyepggGgGYGFLRDDSFVPGPNDIYVSPSQIRKFNLKTGDKIRGPIRLPKENE------KFAGLLYVQSVND 256
222529055 184 gegvLEIIyepggGgGYGFLRDDSFVPGPNDIYVSPSQIRKFNLKTGDKIRGPIRLPKENE------KFAGLLYVQSVND 257
170781876 534 LPPEEAANRVEFGKLTPLYPQDRLSLET--EPAKLTTRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAIANAIATNNPEV 611
219683150 371 LSVEEAQDRPNFSKLTPLYPDERLRMET--TPNRIIGRLIDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEV 448
241196889 362 LSVEEAQDRPNFSKLTPLYPDERLRMET--TPNRIIGRLIDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEV 439
241191484 362 LSVEEAQDRPNFSKLTPLYPDERLRMET--TPNRIIGRLIDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEV 439
119026472 368 MSVEEAQHRPQFSKLTPLYPQERLKQET--TPNKLTGRLIDIVAPIGKGQRGLIVSPPKAGKTITLQNIANAIATNNPEV 445
213691185 385 QSVEEALNRPQFSKLTPLYPQERLKQET--APNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANSIAANNPEV 462
283456816 380 LSVEEAMNRPQFNKLTPLYPQERLKQET--TPNKLTGRLVDIVAPIGKGQRGLIVSPPKAGKTITLQNIANAIATNNPEV 457
283782623 348 MSVEEAQSRPQFAKLTPLYPQERLKQET--TPNRMLGRVIDLVAPIGKGQRGLIVSPPKAGKTITLQNIANAITTNNPEV 425
302872101 257 MKPEEVAKRTPFEDLTPIFPNKRIILENknEPKDLAVRLIDLIAPIGRGQRGLIVAPPKAGKTTLLKKIANSILTNYDDL 336
222529055 258 MKPEEVAKRTPFEDLTPIFPNKRIILENknEPKDLAVRLIDLIAPIGRGQRGLIVAPPKAGKTTLLKKIANSILTNYDDL 337
170781876 612 HLMVVLVDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASG 691
219683150 449 HLMVVLVDERPEEVTDMERTVKGEIISSTFDRPASDHTIVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASG 528
241196889 440 HLMVVLVDERPEEVTDMERTVKGEIISSTFDRPASDHTIVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASG 519
241191484 440 HLMVVLVDERPEEVTDMERTVKGEIISSTFDRPASDHTIVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASG 519
119026472 446 HLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASG 525
213691185 463 HLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASG 542
283456816 458 HLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASG 537
283782623 426 HLMVVLVDERPEEVTDMERTVQGEVISSTFDRPATDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPTSG 505
302872101 337 HLIVLLIDERPEEVTDMQDSIKAEIHYSTFDETPEHHIKVAEMVLERAMRLVECKKDVVILLDSLTRLARAYNLVEPPSG 416
222529055 338 HLIVLLIDERPEEVTDMQDSIKAEIHYSTFDETPEHHIKVAEMVLERAMRLVECKKDVVILLDSLTRLARAYNLVEPPSG 417
170781876 692 RILSGGVDSSALYPPKRFFGAARNIEHGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFPAVDVNA 771
219683150 529 RILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAVDINA 608
241196889 520 RILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAVDINA 599
241191484 520 RILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAVDINA 599
119026472 526 RILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDVNA 605
213691185 543 RILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDINA 622
283456816 538 RILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDVNA 617
283782623 506 RILSGGVDAQALYPPKKFFGAARNIEDGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRDLADKRLFPAVDINA 585
302872101 417 RTLSGGLDPNALHKPKKFFGAARNLKEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHLDRKLSEKRIFPAIDINK 496
222529055 418 RTLSGGLDPNALHKPKKFFGAARNLKEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHLDRKLSEKRIFPAIDINK 497
170781876 772 SGTRREEMLMGADEVKVTWKLRRALAGLEQQQALEIVLSRLKETTSNVEFLMKVQASMPNTGNGV 836
219683150 609 SGTRREELITNPQELPVLYSLRRLLGGLEPEQAYQTLVPRLKKTMTNADFFKAIVQQGNSSLNGG 673
241196889 600 SGTRREELITNPQELPVLYSLRRLLGGLEPEQAYQTLVPRLKKTMTNADFFKAIVQQGNSSLNGG 664
241191484 600 SGTRREELITNPQELPVLYSLRRLLGGLEPEQAYQTLVPRLKKTMTNADFFKAIVQQGNSSLNGG 664
119026472 606 SGTRREELITDPQELPIIYRLRRLLGGLEPEQAYQTLVPRLKKTATNRDFMASLIQQSGNATNGN 670
213691185 623 SGTRREELITNPQELPVIYRLRRLLGGMEPEQAYQTLVPRLKKTATNRDFLAAIVQQQSGAVNGN 687
283456816 618 SGTRREELITDPQELPIIYRLRRLLGGLEPEQAYQTLVPRLKKTATNRDFMASLIQQSGNVTSGN 682
283782623 586 SGTRREELITPAADLPVIYRLRRLFGGLEAEQAYQTLIPRLKKTASNRDFLAAITQQTGTATNNS 650
302872101 497 SGTRREELLLSEEEKAAVDAIRRALSNFGTAETTERIISMLSQTKSNEEFIRKILQNLR------ 555
222529055 498 SGTRREELLLSEEEKAAVDAIRRALSNFGTAETTERIISMLSQTKSNEEFIRKILQNLR------ 556
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