2DSB,3BM4,2DSC,3ACA,5QJ4,3AC9,5NQR


Conserved Protein Domain Family
NUDIX_ADPRase_Nudt5

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cd18888: NUDIX_ADPRase_Nudt5 
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase (ADPRase) (also known as NUDIX (Nucleoside diphosphate-linked moiety X)) motif 5; Nudt5) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the NUDIX motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity.
Statistics
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PSSM-Id: 467598
Aligned: 98 rows
Threshold Bit Score: 159.185
Created: 5-Jan-2011
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:3BM4: Homo sapiens Nudt5 binds Mg and AMPCPR, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #           ###             #   #                   
2DSB_A      58 TADGVAVIPVLQrt--lhYECIVLVKQFRPPMgGYCIEFPAGLIDdgETPEAAALRELEEETGYkg-------------- 121 human
3BM4_A      58 TADGVAVIPVLQrt--lhYECIVLVKQFRPPMgGYCIEFPAGLIDdgETPEAAALRELEEETGYkg-------------- 121 human
EAR94851    50 EFDGVSMAPILYntp-tgIKQIIIIAQFRPPAgKFMLEFPAGLVEs-DNLFENAERELKEETGYymdkqs---------- 117 Tetrahymena therm...
CAK58044    43 HRGGVEIIPIINyk--ekPSQLILIANFRPPIrKFCLEFPSGLVDqeGTIEENGLREIKEETGYtaq------------- 107 Paramecium tetrau...
EAL45665    54 DVDAVELVPIIYypiskkPTSLVFIREFRVPVnTMVWQLAAGLIDpnETVEFSAKRELKEETGYva-------------- 119 Entamoeba histoly...
EDK34922    40 TTSTVIIISKLVp-----SNRYIFIKQYRPAVdKYVIGFPAGLVEn-ESLFESAVRELKEETGYng-------------- 99  Clostridium kluyv...
KAH7830642  43 KTQAVEIISLLVqk--ekKPQLILIKQYRAPSnMMLIEFPAGIVPpgVDPAAHAVQELYEETGYiatipktdekipdssf 120
ADK16252    40 TTNTVVIVGKLVp-----SNKYIFIKQYRAAIdKYVIGFPAGLVEg-DNIGENALRELEEETGYkg-------------- 99  Clostridium ljung...
EET84208    26 TSKTVVIIPKLVp-----SNRYLMIKQYRPAInNYILGFPAGLVEg-EDLEKEALRELKEETGYig-------------- 85  Clostridium carbo...
ELP88828    44 PRKGVEIVPIVYypvtqrQSQFVVINQFRPPV-GYTWQFPAGLIDdgEEPERSAMRELTEETGFig-------------- 108 Entamoeba invaden...
Feature 1                                           #        #                        #        
2DSB_A     122 ---------------------------dIAECSPAVCMDPGLSNCTIHIVTVTINGddaenARPKPKPGDGE--FVEVIS 172 human
3BM4_A     122 ---------------------------dIAECSPAVCMDPGLSNCTIHIVTVTINGddaenARPKPKPGDGE--FVEVIS 172 human
EAR94851   118 -----------------------qieelSFPNIPISVDDPGLCSGSGKFIVVKVDYkdirnQKITQELDEAE--NIRVHL 172 Tetrahymena therm...
CAK58044   108 -------------------------irhFQYNGVRIRNDPWKSTENEVSIIVDIDGdsevnLNPKQELESDE--NIIVYK 160 Paramecium tetrau...
EAL45665   120 --------------------------ekVLKVSKRVAAAPAESDTYVQYVSLLINGdapenQNPKQELGSSE--DITVHV 171 Entamoeba histoly...
EDK34922   100 ---------------------------rIKSVGPELYANPALVTDRVRVIKMEIDEnleenKNPKQQLEEAE--DIQVIA 150 Clostridium kluyv...
KAH7830642 121 testkmddeipssstssskfpsfsdlsvLASISEPVMVSPAFSCTRSTVVTFVVDGdlpenKNPQAHNVEEEgeITEPLL 200
ADK16252   100 ---------------------------eVKSMSPMLYSNPALLTDKVTLARVDIYEdlmenQIPIQKLEPEE--DIQVIA 150 Clostridium ljung...
EET84208    86 ---------------------------kIKTISPELYSNAALLTDTVRVVNAEIDEtieenLNPKQHLESEE--EIEVIL 136 Clostridium carbo...
ELP88828   109 --------------------------erVLRMTSVIYPFPEYSDTQIRMATILINGddqmnTKPIQYLGMSE--SIFVHL 160 Entamoeba invaden...
Feature 1                                        
2DSB_A     173 LPk-nDLLQRLDALVAeehLTVDARVYSYALALK 205 human
3BM4_A     173 LPk-nDLLQRLDALVAeehLTVDARVYSYALALK 205 human
EAR94851   173 VNldsQLLSSLIQLAEnngYWISTKLYTFAAGFC 206 Tetrahymena thermophila SB210
CAK58044   161 MNmgkTLADEILQLAQekdYEISGLLWFFALGQQ 194 Paramecium tetraurelia
EAL45665   172 VPl-kEVEDFLSKRSEa-gETVEARLFCFACSSY 203 Entamoeba histolytica HM-1:IMSS
EDK34922   151 LHk-dEVREFLLREQAk-gTAVAIAPWYVFYGLH 182 Clostridium kluyveri DSM 555
KAH7830642 201 VDfdeHLMERLNEMAKvenQAIDGRVYMFAKGVS 234
ADK16252   151 LHr-eELKDFLIKEQAr-gTAIGMGVWYVFYGLS 182 Clostridium ljungdahlii ATCC 49587
EET84208   137 VNk-nNLKNFLLEEQAk-gTAVAMGTWYIFCEGC 168 Clostridium carboxidivorans P7
ELP88828   161 VDt-tQFSEFVWKKVEk-nENVGGMMFSLACGNM 192 Entamoeba invadens IP1

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